The 2.0 version of rSNPBase

Variant report

Variant rs55796175
Chromosome Location chr5:118822389-118822390
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:118789000-118826800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
2 chr5:118789400-118831200 Weak transcription NH-A brain
3 chr5:118789400-118831600 Weak transcription HSMMtube muscle
4 chr5:118791800-118846600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr5:118794800-118861200 Weak transcription HSMM muscle
6 chr5:118804200-118879600 Weak transcription Primary T killer memory cells from peripheral blood blood
7 chr5:118804800-118837000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
8 chr5:118805200-118839400 Weak transcription NHEK skin
9 chr5:118805800-118829400 Weak transcription Rectal Smooth Muscle rectum
10 chr5:118806000-118846400 Weak transcription Esophagus oesophagus
11 chr5:118806000-118846400 Weak transcription Spleen Spleen
12 chr5:118806200-118831400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
13 chr5:118806200-118844800 Weak transcription Thymus Thymus
14 chr5:118806200-118846400 Weak transcription Pancreas Pancrea
15 chr5:118806200-118855600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
16 chr5:118806400-118831200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr5:118806400-118845000 Weak transcription Fetal Stomach stomach
18 chr5:118806400-118846400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
19 chr5:118806600-118832000 Weak transcription HUVEC blood vessel
20 chr5:118806800-118845400 Weak transcription Fetal Heart heart
21 chr5:118808000-118839600 Strong transcription Monocytes-CD14+_RO01746 blood
22 chr5:118808000-118839800 Weak transcription Psoas Muscle Psoas
23 chr5:118809600-118838000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
24 chr5:118810600-118823200 Strong transcription Primary T helper cells fromperipheralblood blood
25 chr5:118811200-118839600 Weak transcription Brain Germinal Matrix brain
26 chr5:118812000-118846400 Weak transcription NHLF lung
27 chr5:118812200-118822400 Strong transcription Placenta Placenta
28 chr5:118812200-118833800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
29 chr5:118814000-118831200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
30 chr5:118814000-118831200 Weak transcription Small Intestine intestine
31 chr5:118814000-118838200 Weak transcription Fetal Intestine Small intestine
32 chr5:118814000-118845000 Weak transcription Gastric stomach
33 chr5:118814000-118845200 Weak transcription Aorta Aorta
34 chr5:118814200-118831600 Weak transcription A549 lung
35 chr5:118814600-118831800 Weak transcription Muscle Satellite Cultured Cells --
36 chr5:118814600-118832600 Weak transcription Colonic Mucosa Colon
37 chr5:118814800-118832200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
38 chr5:118814800-118839400 Weak transcription Right Ventricle heart
39 chr5:118814800-118844800 Weak transcription Lung lung
40 chr5:118815000-118831800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
41 chr5:118815200-118827200 Weak transcription Osteobl bone
42 chr5:118815400-118831400 Weak transcription Fetal Muscle Trunk muscle
43 chr5:118815400-118835400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
44 chr5:118815400-118839000 Weak transcription Cortex derived primary cultured neurospheres brain
45 chr5:118815600-118825000 Weak transcription Colon Smooth Muscle Colon
46 chr5:118815600-118825200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
47 chr5:118815600-118829400 Weak transcription Primary T helper naive cells fromperipheralblood blood
48 chr5:118815600-118831600 Weak transcription Fetal Muscle Leg muscle
49 chr5:118815800-118824800 Weak transcription Stomach Smooth Muscle stomach
50 chr5:118815800-118825000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015