Variant report

Variant	rs60161062
Chromosome Location	chr5:118659537-118659538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:118658870..118659716-chr5:118670433..118671147,2	MCF-7	breast:
2	chr5:118657545..118660417-chr5:118661567..118663865,2	MCF-7	breast:
3	chr5:118657976..118659657-chr5:118675627..118677194,2	MCF-7	breast:
4	chr5:118624518..118627155-chr5:118657775..118661009,3	MCF-7	breast:
5	chr5:118650696..118652254-chr5:118657366..118659634,2	K562	blood:
6	chr5:118623079..118625774-chr5:118657977..118661910,3	MCF-7	breast:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs11950366	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11951771	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11954854	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11955852	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11956042	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11956215	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11956285	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11958957	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11959451	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11959659	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11959729	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11959964	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11960246	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11960654	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17145189	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17145194	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17145196	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17145198	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17164572	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1876737	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3813301	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3813302	0.89[ASN][1000 genomes]
rs3813304	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3813305	0.84[EUR][1000 genomes]
rs4392658	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60507834	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60756572	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66535134	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67154545	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67311526	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67708265	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6861849	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6862299	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6862320	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6862517	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6862831	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6868688	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6868702	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6869017	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6875361	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6883394	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72786136	0.98[EUR][1000 genomes]
rs72786141	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72786142	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72786143	0.98[EUR][1000 genomes]
rs72786144	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72786149	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72786152	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72786157	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72786159	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72786161	0.98[EUR][1000 genomes]
rs73235259	0.94[ASN][1000 genomes]
rs73235260	0.94[ASN][1000 genomes]
rs73790807	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7703577	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7703998	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7704026	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7704291	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7704326	0.94[ASN][1000 genomes]
rs7704334	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7704386	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7704398	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7704487	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7707221	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7707736	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7710939	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7711101	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7711312	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7712227	0.98[EUR][1000 genomes]
rs7721976	0.94[ASN][1000 genomes]
rs7722687	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7722699	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7723976	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7724082	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7724178	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7724204	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7725244	0.98[EUR][1000 genomes]
rs7725878	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7737934	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757136	chr5:118555863-118667748	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv2759374	chr5:118555863-118667748	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1024648	chr5:118608175-118678268	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv869828	chr5:118610548-118691190	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118645200-118664000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr5:118645800-118661800	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr5:118648000-118664600	Enhancers	Primary B cells from peripheral blood	blood
4	chr5:118650000-118664000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr5:118651400-118662000	Weak transcription	Fetal Stomach	stomach
6	chr5:118651800-118660400	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr5:118652400-118659800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr5:118652800-118661800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr5:118653600-118660000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr5:118653800-118663000	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr5:118654400-118663400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr5:118654600-118661800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr5:118655000-118664600	Enhancers	Thymus	Thymus
14	chr5:118655600-118662600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr5:118655600-118663200	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr5:118655800-118660400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr5:118655800-118661400	Weak transcription	Left Ventricle	heart
18	chr5:118656200-118660400	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr5:118656400-118659600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr5:118656400-118663000	Enhancers	Placenta	Placenta
21	chr5:118656600-118664400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr5:118656800-118660000	Enhancers	Primary hematopoietic stem cells	blood
23	chr5:118657000-118659600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr5:118657000-118660200	Enhancers	H1 Cell Line	embryonic stem cell
25	chr5:118657200-118659600	Enhancers	H9 Cell Line	embryonic stem cell
26	chr5:118657200-118659600	Enhancers	Pancreas	Pancrea
27	chr5:118657200-118659800	Enhancers	Duodenum Mucosa	Duodenum
28	chr5:118657200-118660000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr5:118657200-118663200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr5:118657200-118665200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr5:118657200-118665400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr5:118657400-118660000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr5:118657400-118660200	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr5:118657400-118663200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr5:118657400-118664000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr5:118657600-118660000	Enhancers	Aorta	Aorta
37	chr5:118657600-118661600	Weak transcription	Spleen	Spleen
38	chr5:118657600-118664200	Weak transcription	Stomach Smooth Muscle	stomach
39	chr5:118657600-118665200	Enhancers	NH-A	brain
40	chr5:118657800-118659800	Enhancers	Stomach Mucosa	stomach
41	chr5:118657800-118660000	Enhancers	Dnd41	blood
42	chr5:118657800-118660200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
43	chr5:118657800-118664800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr5:118658000-118659600	Enhancers	Fetal Heart	heart
45	chr5:118658000-118660200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr5:118658000-118660400	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr5:118658000-118660400	Flanking Active TSS	GM12878-XiMat	blood
48	chr5:118658000-118660800	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr5:118658000-118661600	Enhancers	Primary T cells fromperipheralblood	blood
50	chr5:118658200-118659600	Enhancers	Muscle Satellite Cultured Cells	--

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