Variant report

Variant	rs11961670
Chromosome Location	chr6:39210584-39210585
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11961707	0.83[EUR][1000 genomes]
rs11964657	1.00[EUR][1000 genomes]
rs11965515	1.00[EUR][1000 genomes]
rs11967855	1.00[EUR][1000 genomes]
rs11968074	1.00[EUR][1000 genomes]
rs11969089	1.00[EUR][1000 genomes]
rs59403189	1.00[EUR][1000 genomes]
rs73420543	1.00[EUR][1000 genomes]
rs7738553	1.00[EUR][1000 genomes]
rs9471038	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1022974	chr6:39120271-39277553	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39205400-39211400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:39207400-39211600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:39207600-39211000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:39207800-39211400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:39208000-39211200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:39208400-39211400	Weak transcription	Adipose Nuclei	Adipose
7	chr6:39208600-39211200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:39208600-39211400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:39208800-39210800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:39208800-39211600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:39208800-39211600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:39208800-39211600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:39208800-39215000	Weak transcription	Fetal Intestine Small	intestine
14	chr6:39209000-39211600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:39210200-39210600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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