Variant report

Variant	rs11961707
Chromosome Location	chr6:39227936-39227937
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11961670	0.83[EUR][1000 genomes]
rs11964657	0.83[EUR][1000 genomes]
rs11965515	0.83[EUR][1000 genomes]
rs11967855	0.83[EUR][1000 genomes]
rs11968074	0.83[EUR][1000 genomes]
rs11969089	0.83[EUR][1000 genomes]
rs59403189	0.83[EUR][1000 genomes]
rs73420543	0.83[EUR][1000 genomes]
rs7738553	0.83[EUR][1000 genomes]
rs9471038	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1022974	chr6:39120271-39277553	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv830645	chr6:39227601-39408310	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39224400-39231000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr6:39224400-39238400	Weak transcription	Spleen	Spleen
3	chr6:39224600-39229200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:39224600-39229600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:39224600-39230800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:39225000-39231000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:39226800-39228000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:39226800-39228400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr6:39227200-39229200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:39227200-39231000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:39227200-39236000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:39227400-39229000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:39227800-39229400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:39227800-39230600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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