Variant report

Variant	rs11964657
Chromosome Location	chr6:39276762-39276763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11961670	1.00[EUR][1000 genomes]
rs11961707	0.83[EUR][1000 genomes]
rs11962177	1.00[YRI][hapmap]
rs11965515	1.00[EUR][1000 genomes]
rs11967855	1.00[EUR][1000 genomes]
rs11968074	1.00[EUR][1000 genomes]
rs11969089	1.00[EUR][1000 genomes]
rs59403189	1.00[EUR][1000 genomes]
rs73420543	1.00[EUR][1000 genomes]
rs7738553	1.00[EUR][1000 genomes]
rs9471038	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1022974	chr6:39120271-39277553	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv830645	chr6:39227601-39408310	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv533806	chr6:39270073-39397337	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39265600-39280800	Weak transcription	Right Atrium	heart
2	chr6:39271000-39278800	Weak transcription	Fetal Thymus	thymus
3	chr6:39273600-39278000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:39275600-39277600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:39275600-39278000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:39276200-39277800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:39276400-39276800	Strong transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links