Variant report

Variant	rs59403189
Chromosome Location	chr6:39187871-39187872
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:39187851..39189714-chr6:39273668..39275855,2	K562	blood:
2	chr6:39159091..39165465-chr6:39185781..39190794,6	K562	blood:
3	chr6:39173759..39176293-chr6:39187054..39189578,2	K562	blood:
4	chr6:39177427..39182769-chr6:39182785..39188256,10	K562	blood:
5	chr6:39155283..39157120-chr6:39186284..39188129,2	K562	blood:
6	chr6:39166640..39168889-chr6:39187099..39189518,2	MCF-7	breast:
7	chr6:39186069..39188057-chr6:39192184..39193839,2	MCF-7	breast:
8	chr6:39178389..39182010-chr6:39186397..39189185,3	MCF-7	breast:
9	chr6:39186927..39189268-chr6:39206677..39209448,2	K562	blood:

No data

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11961670	1.00[EUR][1000 genomes]
rs11961707	0.83[EUR][1000 genomes]
rs11964657	1.00[EUR][1000 genomes]
rs11965515	1.00[EUR][1000 genomes]
rs11967855	1.00[EUR][1000 genomes]
rs11968074	1.00[EUR][1000 genomes]
rs11969089	1.00[EUR][1000 genomes]
rs73420543	1.00[EUR][1000 genomes]
rs7738553	1.00[EUR][1000 genomes]
rs9471038	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1022974	chr6:39120271-39277553	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39150600-39193800	Genic enhancers	Fetal Intestine Small	intestine
2	chr6:39156800-39193400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:39163800-39192800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:39169400-39193600	Enhancers	Liver	Liver
5	chr6:39174200-39195000	Enhancers	Stomach Mucosa	stomach
6	chr6:39178000-39193400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:39178600-39193200	Weak transcription	Thymus	Thymus
8	chr6:39181800-39189400	Genic enhancers	K562	blood
9	chr6:39182200-39190000	Enhancers	Pancreas	Pancrea
10	chr6:39182200-39195200	Enhancers	Fetal Lung	lung
11	chr6:39183200-39192800	Weak transcription	Right Atrium	heart
12	chr6:39183400-39192400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:39183600-39188000	Enhancers	A549	lung
14	chr6:39183600-39188600	Weak transcription	Fetal Kidney	kidney
15	chr6:39183600-39188600	Weak transcription	Gastric	stomach
16	chr6:39183600-39191000	Weak transcription	Esophagus	oesophagus
17	chr6:39184400-39188000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:39184400-39191200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:39184400-39193400	Weak transcription	Hela-S3	cervix
20	chr6:39184600-39188600	Enhancers	H1 Cell Line	embryonic stem cell
21	chr6:39184800-39188000	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr6:39185000-39188400	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr6:39185000-39194400	Enhancers	Ovary	ovary
24	chr6:39185200-39188800	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr6:39185400-39189000	Enhancers	Spleen	Spleen
26	chr6:39185600-39192600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:39185800-39188200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr6:39185800-39192000	Weak transcription	Adipose Nuclei	Adipose
29	chr6:39186000-39188400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr6:39186000-39188600	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr6:39186000-39189600	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:39186000-39193800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr6:39186000-39193800	Genic enhancers	Fetal Intestine Large	intestine
34	chr6:39186200-39188800	Genic enhancers	H9 Cell Line	embryonic stem cell
35	chr6:39186200-39189000	Enhancers	Small Intestine	intestine
36	chr6:39186200-39190200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr6:39186200-39195000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr6:39186400-39188400	Genic enhancers	Colonic Mucosa	Colon
39	chr6:39186600-39188200	Enhancers	GM12878-XiMat	blood
40	chr6:39186600-39188600	Genic enhancers	Fetal Stomach	stomach
41	chr6:39186600-39189000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr6:39186800-39188200	Enhancers	Fetal Thymus	thymus
43	chr6:39186800-39191000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr6:39187000-39188000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr6:39187000-39188000	Enhancers	Monocytes-CD14+_RO01746	blood
46	chr6:39187000-39188600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr6:39187000-39191400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr6:39187000-39191600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr6:39187200-39188000	Enhancers	Lung	lung
50	chr6:39187400-39189400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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