Variant report

Variant	rs11965515
Chromosome Location	chr6:39214087-39214088
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11961670	1.00[EUR][1000 genomes]
rs11961707	0.83[EUR][1000 genomes]
rs11964657	1.00[EUR][1000 genomes]
rs11967855	1.00[EUR][1000 genomes]
rs11968074	1.00[EUR][1000 genomes]
rs11969089	1.00[EUR][1000 genomes]
rs59403189	1.00[EUR][1000 genomes]
rs73420543	1.00[EUR][1000 genomes]
rs7738553	1.00[EUR][1000 genomes]
rs9471038	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1022974	chr6:39120271-39277553	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39208800-39215000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:39212000-39219000	Weak transcription	Esophagus	oesophagus
3	chr6:39212200-39215200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:39212600-39215200	Weak transcription	Placenta	Placenta
5	chr6:39214000-39214200	Enhancers	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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