Variant report

Variant	rs1196172
Chromosome Location	chr2:182935822-182935823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:182602861..182608453-chr2:182932595..182937475,8	MCF-7	breast:
2	chr2:182880540..182889219-chr2:182930483..182937514,17	MCF-7	breast:
3	chr2:182753389..182769521-chr2:182932013..182949608,79	MCF-7	breast:
4	chr2:182932067..182937899-chr2:182939888..182947237,17	MCF-7	breast:
5	chr2:182755436..182758763-chr2:182932137..182938145,9	MCF-7	breast:
6	chr2:182770558..182778362-chr2:182931728..182936504,7	MCF-7	breast:
7	chr2:182796425..182800608-chr2:182933282..182936445,5	MCF-7	breast:
8	chr2:182925951..182930145-chr2:182930347..182935935,6	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000221023	Chromatin interaction
ENSG00000138434	Chromatin interaction
ENSG00000150722	Chromatin interaction
ENSG00000260742	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10930986	0.84[EUR][1000 genomes]
rs10930987	0.84[EUR][1000 genomes]
rs1196147	0.84[CEU][hapmap]
rs1196148	0.84[CEU][hapmap]
rs1196149	0.84[CEU][hapmap];0.81[JPT][hapmap]
rs1196151	0.83[CEU][hapmap]
rs1196154	0.84[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes]
rs1196174	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13395058	0.85[EUR][1000 genomes]
rs1921148	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs1963270	0.85[EUR][1000 genomes]
rs4404233	0.88[CEU][hapmap];0.84[TSI][hapmap];0.85[EUR][1000 genomes]
rs6710397	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs7561331	0.88[CEU][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs7579701	0.85[EUR][1000 genomes]
rs7603587	0.88[CEU][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes]
rs987787	0.87[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182918800-182937400	Weak transcription	Thymus	Thymus
2	chr2:182929400-182942600	Weak transcription	Left Ventricle	heart
3	chr2:182929600-182942200	Weak transcription	Fetal Heart	heart
4	chr2:182933200-182937800	Weak transcription	Fetal Thymus	thymus
5	chr2:182933200-182942400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr2:182933800-182937600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr2:182933800-182938000	Weak transcription	Liver	Liver
8	chr2:182934000-182937600	Weak transcription	Osteobl	bone
9	chr2:182934000-182940200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr2:182934000-182944800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:182934200-182942200	Weak transcription	HUVEC	blood vessel
12	chr2:182934200-182943800	Weak transcription	Stomach Mucosa	stomach
13	chr2:182934800-182937600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr2:182934800-182941400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr2:182935200-182940400	Weak transcription	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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