Variant report

Variant	rs13395058
Chromosome Location	chr2:182946600-182946601
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:182885247..182888264-chr2:182945298..182948359,3	MCF-7	breast:
2	chr2:182877550..182879445-chr2:182944540..182946964,2	MCF-7	breast:
3	chr2:182753389..182769521-chr2:182932013..182949608,79	MCF-7	breast:
4	chr2:182941653..182947128-chr2:182990854..182994247,10	MCF-7	breast:
5	chr2:182753988..182769660-chr2:182938612..182954194,58	MCF-7	breast:
6	chr2:182932067..182937899-chr2:182939888..182947237,17	MCF-7	breast:
7	chr2:182792632..182794412-chr2:182945840..182948376,2	MCF-7	breast:
8	chr2:182880158..182888359-chr2:182937576..182947086,29	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000260742	Chromatin interaction
ENSG00000138434	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10930985	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10930986	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10930987	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1196147	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1196148	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1196149	0.88[EUR][1000 genomes]
rs1196151	0.88[EUR][1000 genomes]
rs1196154	0.90[EUR][1000 genomes]
rs1196172	0.85[EUR][1000 genomes]
rs1196174	0.87[EUR][1000 genomes]
rs1921147	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1921148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1963270	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4404233	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6710397	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6747009	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7561331	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7579701	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7603587	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs987787	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182945800-182947200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr2:182946000-182946600	Enhancers	Fetal Lung	lung
3	chr2:182946000-182947400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:182946400-182947200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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