Variant report

Variant	rs7579701
Chromosome Location	chr2:182943921-182943922
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:31)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:31 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:182607688..182608264-chr2:182943431..182944162,2	MCF-7	breast:
2	chr2:182820077..182822937-chr2:182942227..182944128,2	MCF-7	breast:
3	chr2:182606478..182612379-chr2:182941539..182945973,8	MCF-7	breast:
4	chr2:182943387..182944241-chr2:182990575..182991501,3	MCF-7	breast:
5	chr2:182771401..182772201-chr2:182943708..182944296,2	MCF-7	breast:
6	chr2:182817984..182820031-chr2:182941799..182945080,3	MCF-7	breast:
7	chr2:182753389..182769521-chr2:182932013..182949608,79	MCF-7	breast:
8	chr2:182787158..182788882-chr2:182942568..182944661,2	MCF-7	breast:
9	chr2:182807209..182809576-chr2:182943543..182945117,2	MCF-7	breast:
10	chr2:182941653..182947128-chr2:182990854..182994247,10	MCF-7	breast:
11	chr2:182933565..182934313-chr2:182943483..182944173,2	MCF-7	breast:
12	chr2:182601592..182603449-chr2:182943212..182945378,2	MCF-7	breast:
13	chr2:182940136..182945901-chr2:182990915..182998605,17	MCF-7	breast:
14	chr2:182799515..182801884-chr2:182939610..182944921,5	MCF-7	breast:
15	chr2:182753988..182769660-chr2:182938612..182954194,58	MCF-7	breast:
16	chr2:182604086..182610331-chr2:182940196..182944056,7	MCF-7	breast:
17	chr2:182757388..182757961-chr2:182943398..182944181,2	MCF-7	breast:
18	chr2:182943249..182944272-chr2:182991017..182991773,5	MCF-7	breast:
19	chr2:182943137..182945042-chr2:182998880..183001308,2	MCF-7	breast:
20	chr2:182880362..182889935-chr2:182937119..182944893,30	MCF-7	breast:
21	chr2:182435993..182437913-chr2:182941874..182944378,2	MCF-7	breast:
22	chr2:182932067..182937899-chr2:182939888..182947237,17	MCF-7	breast:
23	chr2:182814166..182817095-chr2:182942432..182944854,2	MCF-7	breast:
24	chr2:182777511..182779928-chr2:182940504..182943969,3	MCF-7	breast:
25	chr2:182820183..182822975-chr2:182941873..182944115,2	MCF-7	breast:
26	chr2:182579934..182582108-chr2:182941268..182944055,2	MCF-7	breast:
27	chr2:182943646..182944243-chr2:182990884..182991578,2	MCF-7	breast:
28	chr2:182943683..182945595-chr2:183046138..183048424,2	MCF-7	breast:
29	chr2:182590275..182592284-chr2:182942786..182945570,2	MCF-7	breast:
30	chr2:182942463..182945440-chr2:182995161..182998579,4	MCF-7	breast:
31	chr2:182880158..182888359-chr2:182937576..182947086,29	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000221023	Chromatin interaction
ENSG00000260742	Chromatin interaction
ENSG00000150722	Chromatin interaction
ENSG00000138434	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10930985	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10930986	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10930987	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1196147	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1196148	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1196149	0.86[EUR][1000 genomes]
rs1196151	0.85[EUR][1000 genomes]
rs1196154	0.88[EUR][1000 genomes]
rs1196172	0.85[EUR][1000 genomes]
rs1196174	0.86[EUR][1000 genomes]
rs13395058	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1921147	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1921148	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1963270	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4404233	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6710397	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6747009	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7561331	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7603587	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs987787	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7579701	DNAJC10	cis	cerebellar cortex	BrainEAC

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182934000-182944800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:182942200-182944600	Enhancers	Fetal Intestine Large	intestine
3	chr2:182942200-182944800	Enhancers	Fetal Intestine Small	intestine
4	chr2:182942400-182945200	Enhancers	Hela-S3	cervix
5	chr2:182942600-182945800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:182943200-182944200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr2:182943200-182944200	Weak transcription	Small Intestine	intestine
8	chr2:182943400-182944400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr2:182943800-182944000	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr2:182943800-182944000	Enhancers	Stomach Mucosa	stomach
11	chr2:182943800-182944200	Weak transcription	Fetal Lung	lung

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