Variant report

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:182606478..182612379-chr2:182941539..182945973,8	MCF-7	breast:
2	chr2:182877550..182879445-chr2:182944540..182946964,2	MCF-7	breast:
3	chr2:182817984..182820031-chr2:182941799..182945080,3	MCF-7	breast:
4	chr2:182753389..182769521-chr2:182932013..182949608,79	MCF-7	breast:
5	chr2:182944117..182946257-chr2:182954795..182956782,2	MCF-7	breast:
6	chr2:182807209..182809576-chr2:182943543..182945117,2	MCF-7	breast:
7	chr2:182941653..182947128-chr2:182990854..182994247,10	MCF-7	breast:
8	chr2:182601592..182603449-chr2:182943212..182945378,2	MCF-7	breast:
9	chr2:182940136..182945901-chr2:182990915..182998605,17	MCF-7	breast:
10	chr2:182753988..182769660-chr2:182938612..182954194,58	MCF-7	breast:
11	chr2:182943137..182945042-chr2:182998880..183001308,2	MCF-7	breast:
12	chr2:182932067..182937899-chr2:182939888..182947237,17	MCF-7	breast:
13	chr2:182943683..182945595-chr2:183046138..183048424,2	MCF-7	breast:
14	chr2:182590275..182592284-chr2:182942786..182945570,2	MCF-7	breast:
15	chr2:182942463..182945440-chr2:182995161..182998579,4	MCF-7	breast:
16	chr2:182880158..182888359-chr2:182937576..182947086,29	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10930985	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10930986	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10930987	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1196146	0.85[EUR][1000 genomes]
rs1196147	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1196148	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1196149	0.94[EUR][1000 genomes]
rs1196151	0.95[EUR][1000 genomes]
rs1196154	0.98[EUR][1000 genomes]
rs1196174	0.96[EUR][1000 genomes]
rs13395058	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1921147	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1921148	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1963270	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4404233	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6710397	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7561331	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7579701	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7603587	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs987787	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182942400-182945200	Enhancers	Hela-S3	cervix
2	chr2:182942600-182945800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:182944400-182946000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr2:182944400-182946000	Weak transcription	Fetal Lung	lung

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