Variant report

Variant	rs1196456
Chromosome Location	chr1:151737349-151737350
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr1:151735707-151737745	K562	blood:	n/a	n/a

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:151380793..151382319-chr1:151736014..151737690,2	K562	blood:
2	chr1:151254636..151256899-chr1:151735426..151737662,3	MCF-7	breast:
3	chr1:151734278..151737585-chr1:151760529..151764689,8	MCF-7	breast:
4	chr1:151733895..151739384-chr1:151759968..151766425,14	MCF-7	breast:
5	chr1:151736194..151739106-chr1:151761711..151764631,3	K562	blood:
6	chr1:151735081..151737738-chr1:151803314..151806226,2	MCF-7	breast:
7	chr1:151380793..151382979-chr1:151735863..151737514,2	K562	blood:
8	chr1:151735509..151737891-chr1:151761737..151764631,3	K562	blood:
9	chr1:151717511..151721266-chr1:151734435..151738153,6	MCF-7	breast:
10	chr1:151226585..151228583-chr1:151736339..151739285,2	MCF-7	breast:
11	chr1:151253841..151255362-chr1:151735599..151737592,2	K562	blood:
12	chr1:151731676..151737592-chr1:151803957..151806544,6	MCF-7	breast:

No data

Variant related genes	Relation type
MRPL9	TF binding region
OAZ3	TF binding region
ENSG00000232937	TF binding region
ENSG00000159352	Chromatin interaction
ENSG00000143373	Chromatin interaction
ENSG00000143442	Chromatin interaction
ENSG00000206980	Chromatin interaction
ENSG00000203288	Chromatin interaction
ENSG00000143365	Chromatin interaction
ENSG00000232671	Chromatin interaction
ENSG00000182134	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1054479	0.97[EUR][1000 genomes]
rs10788809	0.94[EUR][1000 genomes]
rs11204884	0.94[EUR][1000 genomes]
rs11204892	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11585294	0.95[EUR][1000 genomes]
rs11586946	0.95[EUR][1000 genomes]
rs11810571	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12238987	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1521185	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3790514	0.97[EUR][1000 genomes]
rs3811414	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3811415	0.95[EUR][1000 genomes]
rs3811416	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4504897	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4618976	0.95[EUR][1000 genomes]
rs4845356	0.94[EUR][1000 genomes]
rs4845570	0.94[EUR][1000 genomes]
rs4845575	0.85[AMR][1000 genomes]
rs4845579	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6659705	0.95[EUR][1000 genomes]
rs6664467	0.82[EUR][1000 genomes]
rs6673002	0.97[EUR][1000 genomes]
rs6673917	0.97[EUR][1000 genomes]
rs6681093	0.94[EUR][1000 genomes]
rs6683364	0.97[EUR][1000 genomes]
rs6694952	0.94[EUR][1000 genomes]
rs7416415	0.95[EUR][1000 genomes]
rs7542898	0.97[EUR][1000 genomes]

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151736600-151740400	Weak transcription	Placenta	Placenta
2	chr1:151736600-151740400	Weak transcription	Lung	lung
3	chr1:151736600-151741800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:151736600-151746200	Weak transcription	Thymus	Thymus
5	chr1:151736600-151746600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:151736600-151751000	Weak transcription	Ovary	ovary
7	chr1:151736800-151737400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr1:151736800-151737400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:151736800-151737800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:151736800-151740400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:151736800-151740400	Weak transcription	Esophagus	oesophagus
12	chr1:151736800-151740400	Weak transcription	Pancreas	Pancrea
13	chr1:151736800-151745400	Weak transcription	Fetal Brain Female	brain
14	chr1:151736800-151745800	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr1:151736800-151745800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr1:151736800-151745800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr1:151736800-151746000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr1:151736800-151746000	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr1:151736800-151746200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr1:151736800-151746200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr1:151736800-151746200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr1:151736800-151746200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr1:151736800-151746200	Weak transcription	Brain Anterior Caudate	brain
24	chr1:151736800-151746200	Weak transcription	Fetal Thymus	thymus
25	chr1:151736800-151746400	Weak transcription	Aorta	Aorta
26	chr1:151736800-151746400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr1:151736800-151746400	Weak transcription	Right Ventricle	heart
28	chr1:151736800-151746600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr1:151736800-151746600	Weak transcription	Psoas Muscle	Psoas
30	chr1:151736800-151746800	Weak transcription	Left Ventricle	heart
31	chr1:151736800-151746800	Weak transcription	Spleen	Spleen
32	chr1:151736800-151747200	Weak transcription	Fetal Brain Male	brain
33	chr1:151736800-151747400	Weak transcription	Fetal Muscle Trunk	muscle
34	chr1:151736800-151747800	Weak transcription	Primary hematopoietic stem cells	blood
35	chr1:151736800-151748000	Weak transcription	Colonic Mucosa	Colon
36	chr1:151736800-151750800	Weak transcription	Right Atrium	heart
37	chr1:151736800-151762600	Weak transcription	Gastric	stomach
38	chr1:151737000-151737400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr1:151737000-151737400	Enhancers	Dnd41	blood
40	chr1:151737000-151737600	Enhancers	HMEC	breast
41	chr1:151737000-151737600	Enhancers	NHDF-Ad	bronchial
42	chr1:151737000-151737800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr1:151737000-151737800	Enhancers	Hela-S3	cervix
44	chr1:151737000-151737800	Enhancers	HepG2	liver
45	chr1:151737000-151740400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr1:151737000-151740400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr1:151737000-151740400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr1:151737000-151740400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr1:151737000-151740600	Weak transcription	Adipose Nuclei	Adipose
50	chr1:151737000-151740600	Weak transcription	Fetal Heart	heart

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