Variant report

Variant	rs6681093
Chromosome Location	chr1:151755284-151755285
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1054479	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10788809	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11204884	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11204892	0.98[EUR][1000 genomes]
rs11576810	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs11585294	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11586446	0.86[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs11586946	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11588258	0.81[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11588634	0.81[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11810571	1.00[EUR][1000 genomes]
rs1196456	0.94[EUR][1000 genomes]
rs1196467	0.86[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs12238987	1.00[EUR][1000 genomes]
rs13376155	0.86[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs1521185	1.00[EUR][1000 genomes]
rs17568246	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs3790514	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3811414	0.91[CEU][hapmap];0.93[TSI][hapmap];1.00[EUR][1000 genomes]
rs3811415	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3811416	0.91[CEU][hapmap];1.00[EUR][1000 genomes]
rs4504897	1.00[EUR][1000 genomes]
rs4618976	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4845356	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4845570	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4845579	0.91[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs61815078	0.81[ASN][1000 genomes]
rs6659705	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6664467	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6673002	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6673917	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6683364	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6694952	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7007	0.86[CHB][hapmap];0.90[JPT][hapmap];0.87[TSI][hapmap];0.81[ASN][1000 genomes]
rs7416415	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7542898	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151736800-151762600	Weak transcription	Gastric	stomach
2	chr1:151737000-151762400	Weak transcription	Fetal Intestine Small	intestine
3	chr1:151737000-151762400	Weak transcription	HSMMtube	muscle
4	chr1:151737000-151762600	Weak transcription	Small Intestine	intestine
5	chr1:151740800-151759000	Weak transcription	Esophagus	oesophagus
6	chr1:151741000-151762600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr1:151741200-151756200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr1:151742800-151762600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:151744000-151762200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr1:151744600-151762200	Weak transcription	Primary B cells from cord blood	blood
11	chr1:151745400-151755600	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr1:151745600-151755400	Strong transcription	Primary T cells from cord blood	blood
13	chr1:151745800-151755400	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr1:151745800-151755600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr1:151745800-151755600	Strong transcription	Dnd41	blood
16	chr1:151746000-151762400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr1:151746200-151755600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr1:151746200-151755600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr1:151746800-151762000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr1:151747000-151762400	Weak transcription	Psoas Muscle	Psoas
21	chr1:151747000-151762400	Weak transcription	Right Ventricle	heart
22	chr1:151747200-151759600	Weak transcription	HMEC	breast
23	chr1:151747200-151762400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr1:151747600-151762400	Weak transcription	Pancreas	Pancrea
25	chr1:151748400-151761400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr1:151748400-151762200	Weak transcription	Primary hematopoietic stem cells	blood
27	chr1:151748600-151762400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr1:151748800-151761800	Weak transcription	HepG2	liver
29	chr1:151748800-151762400	Weak transcription	Colonic Mucosa	Colon
30	chr1:151749000-151758800	Weak transcription	Duodenum Mucosa	Duodenum
31	chr1:151749200-151755800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr1:151749200-151762600	Weak transcription	Spleen	Spleen
33	chr1:151749400-151756400	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr1:151749400-151762400	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr1:151749600-151762000	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr1:151749600-151762200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr1:151749600-151762600	Weak transcription	Lung	lung
38	chr1:151751000-151755400	Weak transcription	K562	blood
39	chr1:151751200-151762000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr1:151751200-151762400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr1:151751400-151762000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr1:151751400-151762200	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr1:151751400-151762400	Weak transcription	Rectal Smooth Muscle	rectum
44	chr1:151751600-151762200	Weak transcription	Brain Angular Gyrus	brain
45	chr1:151751600-151762400	Weak transcription	Fetal Muscle Trunk	muscle
46	chr1:151751800-151756000	Weak transcription	Fetal Muscle Leg	muscle
47	chr1:151752400-151756000	Weak transcription	Left Ventricle	heart
48	chr1:151752400-151762000	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr1:151752400-151762000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr1:151752400-151762400	Weak transcription	Ovary	ovary

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