Variant report

Variant	rs11586446
Chromosome Location	chr1:151712488-151712489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:151711443..151713747-chr1:151762269..151764289,2	MCF-7	breast:
2	chr1:151511953..151514872-chr1:151710321..151712686,3	MCF-7	breast:
3	chr1:151677618..151679367-chr1:151711033..151713298,2	MCF-7	breast:
4	chr1:151710281..151715545-chr1:151734396..151738470,5	MCF-7	breast:
5	chr1:151709592..151712646-chr1:151734561..151736602,3	MCF-7	breast:
6	chr1:151680015..151682391-chr1:151711157..151713742,2	MCF-7	breast:
7	chr1:151711448..151713959-chr1:151724394..151726703,2	K562	blood:
8	chr1:151712387..151713103-chr1:151762609..151763358,3	MCF-7	breast:
9	chr1:151711863..151713959-chr1:151723622..151725894,2	K562	blood:
10	chr1:151712042..151713073-chr1:151808628..151809658,5	MCF-7	breast:
11	chr1:151712112..151713087-chr1:151808881..151809397,2	MCF-7	breast:
12	chr1:151511666..151514194-chr1:151711299..151714141,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000182134	Chromatin interaction
ENSG00000232536	Chromatin interaction
ENSG00000232937	Chromatin interaction
ENSG00000143367	Chromatin interaction
ENSG00000203288	Chromatin interaction
ENSG00000159409	Chromatin interaction
ENSG00000143450	Chromatin interaction
ENSG00000143436	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10788809	0.81[ASN][1000 genomes]
rs11204884	0.84[ASN][1000 genomes]
rs11576810	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11585294	0.81[ASN][1000 genomes]
rs11586946	0.81[ASN][1000 genomes]
rs11587006	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11588258	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs11588634	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1196467	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12122917	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13376155	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17568246	0.91[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1879533	0.93[AMR][1000 genomes]
rs2489890	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3790514	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs3811415	0.81[ASN][1000 genomes]
rs4618976	0.81[ASN][1000 genomes]
rs4845356	0.81[ASN][1000 genomes]
rs4845570	0.81[ASN][1000 genomes]
rs61815078	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6659705	0.81[ASN][1000 genomes]
rs6664467	0.84[ASN][1000 genomes]
rs6673002	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs6673917	0.84[ASN][1000 genomes]
rs6681093	0.86[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs6683364	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs6694952	0.81[ASN][1000 genomes]
rs7007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7542898	0.84[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151710200-151712800	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr1:151710600-151713000	Enhancers	Liver	Liver
3	chr1:151711800-151713600	Enhancers	Placenta Amnion	Placenta Amnion
4	chr1:151712000-151712600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:151712000-151713200	Enhancers	Placenta	Placenta
6	chr1:151712200-151712600	Enhancers	Fetal Intestine Large	intestine
7	chr1:151712200-151712600	Enhancers	Fetal Lung	lung
8	chr1:151712200-151712600	Flanking Active TSS	K562	blood
9	chr1:151712200-151712800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:151712200-151712800	Enhancers	Pancreas	Pancrea
11	chr1:151712200-151712800	Enhancers	Psoas Muscle	Psoas
12	chr1:151712200-151713000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:151712200-151713000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr1:151712200-151713000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:151712200-151713000	Enhancers	Stomach Mucosa	stomach
16	chr1:151712200-151713000	Enhancers	HMEC	breast
17	chr1:151712200-151713000	Enhancers	NHEK	skin
18	chr1:151712200-151713400	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr1:151712400-151712800	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr1:151712400-151713200	Enhancers	Skeletal Muscle Male	skeletal muscle

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