Variant report

Variant	rs13376155
Chromosome Location	chr1:151721270-151721271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr1:151721152-151721544	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr1:151721152-151721541	MCF10A-Er-Src	breast:	n/a	n/a
3	POLR2A	chr1:151721259-151721494	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr1:151721107-151721476	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr1:151721124-151721483	MCF10A-Er-Src	breast:	n/a	n/a
6	FOS	chr1:151721170-151721441	MCF10A-Er-Src	breast:	n/a	n/a
7	STAT3	chr1:151721116-151721534	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:151720479..151723195-chr1:151726990..151729496,2	MCF-7	breast:
2	chr1:151719068..151723308-chr1:151725326..151729049,4	K562	blood:
3	chr1:151721010..151724509-chr1:151727967..151731258,3	MCF-7	breast:

Variant related genes	Relation type
RNU6-662P	TF binding region
ENSG00000236940	Chromatin interaction
ENSG00000269621	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1054479	0.85[AMR][1000 genomes]
rs10788809	0.81[ASN][1000 genomes]
rs11204884	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11576810	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11585294	0.81[ASN][1000 genomes]
rs11586446	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11586946	0.81[ASN][1000 genomes]
rs11588258	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs11588634	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1196467	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12122917	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17568246	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2489890	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3790514	1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3811415	0.81[ASN][1000 genomes]
rs4618976	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4845356	0.81[ASN][1000 genomes]
rs4845570	0.81[ASN][1000 genomes]
rs61815078	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6659705	0.81[ASN][1000 genomes]
rs6664467	0.84[ASN][1000 genomes]
rs6673002	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6673917	0.84[ASN][1000 genomes]
rs6681093	0.86[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs6683364	1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6694952	0.81[ASN][1000 genomes]
rs7007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7542898	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151712800-151729400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr1:151712800-151731800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:151721200-151721400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:151721200-151721400	Enhancers	HUES64 Cell Line	embryonic stem cell

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