Variant report

Variant	rs1196467
Chromosome Location	chr1:151710038-151710039
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:151709592..151712646-chr1:151734561..151736602,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143436	Chromatin interaction
ENSG00000143450	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10788809	0.81[ASN][1000 genomes]
rs11204884	0.84[ASN][1000 genomes]
rs11576810	0.90[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11585294	0.81[ASN][1000 genomes]
rs11586446	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11586946	0.81[ASN][1000 genomes]
rs11587006	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11588258	1.00[CHB][hapmap]
rs11588634	1.00[CHB][hapmap]
rs12122917	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13376155	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17568246	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1879533	0.85[AMR][1000 genomes]
rs2489890	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3790514	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs3811415	0.81[ASN][1000 genomes]
rs4618976	0.81[ASN][1000 genomes]
rs4845356	0.81[ASN][1000 genomes]
rs4845570	0.81[ASN][1000 genomes]
rs61815078	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6659705	0.81[ASN][1000 genomes]
rs6664467	0.84[ASN][1000 genomes]
rs6673002	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs6673917	0.84[ASN][1000 genomes]
rs6681093	0.86[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs6683364	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs6694952	0.81[ASN][1000 genomes]
rs7007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7542898	0.84[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151702800-151712200	Weak transcription	Stomach Mucosa	stomach
2	chr1:151707800-151710200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr1:151707800-151712200	Weak transcription	Pancreas	Pancrea
4	chr1:151708000-151711800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr1:151708400-151712200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:151709400-151710600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:151709400-151710800	ZNF genes & repeats	Fetal Intestine Small	intestine
8	chr1:151709800-151710400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:151709800-151710400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:151709800-151710400	ZNF genes & repeats	Liver	Liver

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