Variant report

Variant	rs11966023
Chromosome Location	chr6:149560251-149560252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55727121	1.00[EUR][1000 genomes]
rs55766941	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57876770	0.83[AMR][1000 genomes]
rs58569710	1.00[EUR][1000 genomes]
rs60404972	1.00[EUR][1000 genomes]
rs6570955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6900064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6916328	1.00[AMR][1000 genomes]
rs6917720	1.00[EUR][1000 genomes]
rs6923191	1.00[EUR][1000 genomes]
rs73779077	1.00[EUR][1000 genomes]
rs73779089	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779090	1.00[EUR][1000 genomes]
rs73781722	1.00[EUR][1000 genomes]
rs7748981	0.80[YRI][hapmap]
rs7750616	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7765356	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9918485	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149542200-149560600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr6:149555600-149562200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:149555800-149561000	Weak transcription	Stomach Mucosa	stomach
4	chr6:149557400-149561000	Weak transcription	Brain Substantia Nigra	brain
5	chr6:149558000-149563800	Weak transcription	Ovary	ovary
6	chr6:149558400-149560800	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:149559600-149561200	Enhancers	Fetal Heart	heart
8	chr6:149560200-149561000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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