Variant report

Variant	rs7765356
Chromosome Location	chr6:149566045-149566046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11966023	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55727121	1.00[EUR][1000 genomes]
rs55766941	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57876770	0.83[AMR][1000 genomes]
rs58569710	1.00[EUR][1000 genomes]
rs60404972	1.00[EUR][1000 genomes]
rs6570955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6900064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6916328	1.00[AMR][1000 genomes]
rs6917720	1.00[EUR][1000 genomes]
rs6923191	1.00[EUR][1000 genomes]
rs73779077	1.00[EUR][1000 genomes]
rs73779089	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779090	1.00[EUR][1000 genomes]
rs73781722	1.00[EUR][1000 genomes]
rs7750616	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9918485	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149563200-149569800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:149563600-149569800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:149565600-149567600	Enhancers	Primary monocytes fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links