Variant report

Variant	rs7750616
Chromosome Location	chr6:149557712-149557713
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149556751..149560546-chr6:149560823..149562972,3	MCF-7	breast:
2	chr6:149400690..149404463-chr6:149557705..149560765,3	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11966023	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55727121	1.00[EUR][1000 genomes]
rs55766941	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57876770	0.83[AMR][1000 genomes]
rs58569710	1.00[EUR][1000 genomes]
rs60404972	1.00[EUR][1000 genomes]
rs6570955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6900064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6916328	1.00[AMR][1000 genomes]
rs6917720	1.00[EUR][1000 genomes]
rs6923191	1.00[EUR][1000 genomes]
rs73779077	1.00[EUR][1000 genomes]
rs73779089	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779090	1.00[EUR][1000 genomes]
rs73781722	1.00[EUR][1000 genomes]
rs7765356	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9918485	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149542200-149560600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr6:149545800-149557800	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:149545800-149560200	Weak transcription	Right Atrium	heart
4	chr6:149550200-149557800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:149551800-149558000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:149553800-149558200	Enhancers	HUVEC	blood vessel
7	chr6:149554000-149558200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr6:149554200-149558000	Weak transcription	Brain Anterior Caudate	brain
9	chr6:149555600-149562200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:149555800-149557800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:149555800-149561000	Weak transcription	Stomach Mucosa	stomach
12	chr6:149556000-149557800	Enhancers	Hela-S3	cervix
13	chr6:149556200-149557800	Enhancers	NH-A	brain
14	chr6:149556600-149557800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:149556800-149558000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr6:149557000-149557800	Weak transcription	Ovary	ovary
17	chr6:149557000-149558000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:149557000-149558000	Weak transcription	Fetal Lung	lung
19	chr6:149557000-149558000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr6:149557000-149558400	Enhancers	Brain Hippocampus Middle	brain
21	chr6:149557000-149560200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:149557200-149557800	Weak transcription	Osteobl	bone
23	chr6:149557200-149558200	Enhancers	Fetal Stomach	stomach
24	chr6:149557200-149560000	Enhancers	Brain Germinal Matrix	brain
25	chr6:149557400-149558200	Enhancers	Stomach Smooth Muscle	stomach
26	chr6:149557400-149558400	Enhancers	Fetal Brain Female	brain
27	chr6:149557400-149558400	Enhancers	Fetal Heart	heart
28	chr6:149557400-149558400	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr6:149557400-149558600	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr6:149557400-149561000	Weak transcription	Brain Substantia Nigra	brain

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