Variant report

Variant	rs55727121
Chromosome Location	chr6:149531387-149531388
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149507136..149509963-chr6:149530211..149533183,2	K562	blood:
2	chr6:149525520..149529073-chr6:149530163..149532757,3	K562	blood:
3	chr6:149529664..149531890-chr6:149533306..149535145,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11966023	1.00[EUR][1000 genomes]
rs55658796	1.00[EUR][1000 genomes]
rs55766941	1.00[EUR][1000 genomes]
rs58569710	1.00[EUR][1000 genomes]
rs60404972	1.00[EUR][1000 genomes]
rs6570955	1.00[EUR][1000 genomes]
rs6900064	1.00[EUR][1000 genomes]
rs6917720	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6923191	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779077	1.00[EUR][1000 genomes]
rs73779089	1.00[EUR][1000 genomes]
rs73779090	1.00[EUR][1000 genomes]
rs73781722	1.00[EUR][1000 genomes]
rs7750616	1.00[EUR][1000 genomes]
rs7765356	1.00[EUR][1000 genomes]
rs9485349	1.00[EUR][1000 genomes]
rs9498195	1.00[EUR][1000 genomes]
rs9918485	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149529600-149533800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:149529800-149533000	Weak transcription	Brain Germinal Matrix	brain
3	chr6:149530600-149532000	Enhancers	Stomach Smooth Muscle	stomach
4	chr6:149530600-149534600	Enhancers	Colon Smooth Muscle	Colon
5	chr6:149530600-149534800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:149530600-149534800	Enhancers	Primary T cells fromperipheralblood	blood
7	chr6:149530600-149535400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:149530600-149535400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:149530600-149535600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:149530600-149535600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr6:149530800-149531600	Enhancers	GM12878-XiMat	blood
12	chr6:149530800-149531800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:149530800-149532000	Enhancers	Placenta Amnion	Placenta Amnion
14	chr6:149530800-149532600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:149530800-149532600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr6:149530800-149532600	Enhancers	K562	blood
17	chr6:149530800-149534200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr6:149530800-149534600	Enhancers	Rectal Smooth Muscle	rectum
19	chr6:149530800-149534800	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr6:149530800-149534800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:149530800-149535000	Enhancers	Brain Anterior Caudate	brain
22	chr6:149530800-149535400	Enhancers	Fetal Heart	heart
23	chr6:149530800-149535400	Enhancers	Fetal Lung	lung
24	chr6:149530800-149535600	Enhancers	Primary hematopoietic stem cells	blood
25	chr6:149530800-149535600	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr6:149530800-149535600	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr6:149530800-149535600	Enhancers	Fetal Stomach	stomach
28	chr6:149530800-149536000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:149531000-149531600	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr6:149531000-149532000	Enhancers	Brain Cingulate Gyrus	brain
31	chr6:149531000-149532000	Enhancers	Placenta	Placenta
32	chr6:149531000-149532000	Enhancers	HSMMtube	muscle
33	chr6:149531000-149532000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
34	chr6:149531000-149532400	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr6:149531000-149532600	Enhancers	Primary T cells from cord blood	blood
36	chr6:149531000-149532600	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr6:149531000-149532600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr6:149531000-149532600	Enhancers	HSMM	muscle
39	chr6:149531000-149532800	Enhancers	Primary B cells from cord blood	blood
40	chr6:149531000-149533000	Enhancers	Primary B cells from peripheral blood	blood
41	chr6:149531000-149533000	Enhancers	Primary T killer memory cells from peripheral blood	blood
42	chr6:149531000-149533600	Enhancers	Brain Hippocampus Middle	brain
43	chr6:149531000-149534000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:149531000-149534000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr6:149531000-149534400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr6:149531000-149534600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr6:149531000-149534600	Enhancers	NH-A	brain
48	chr6:149531000-149534800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr6:149531000-149535000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr6:149531000-149535000	Enhancers	Brain Substantia Nigra	brain

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