Variant report

Variant	rs73781722
Chromosome Location	chr6:149578256-149578257
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11966023	1.00[EUR][1000 genomes]
rs55727121	1.00[EUR][1000 genomes]
rs55766941	1.00[EUR][1000 genomes]
rs58569710	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60404972	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6570955	1.00[EUR][1000 genomes]
rs6900064	1.00[EUR][1000 genomes]
rs6917720	1.00[EUR][1000 genomes]
rs6923191	1.00[EUR][1000 genomes]
rs73779077	1.00[EUR][1000 genomes]
rs73779089	1.00[EUR][1000 genomes]
rs73779090	1.00[EUR][1000 genomes]
rs7750616	1.00[EUR][1000 genomes]
rs7765356	1.00[EUR][1000 genomes]
rs9918485	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149568800-149581200	Weak transcription	Right Atrium	heart
2	chr6:149570800-149581600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr6:149570800-149581600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr6:149571000-149582200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr6:149574400-149578800	Weak transcription	Adipose Nuclei	Adipose
6	chr6:149575000-149583000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:149575400-149589200	Weak transcription	Spleen	Spleen
8	chr6:149575600-149581200	Weak transcription	Fetal Thymus	thymus
9	chr6:149575800-149582600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:149576800-149578400	Enhancers	Primary B cells from cord blood	blood
11	chr6:149577200-149579800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr6:149577200-149581200	Weak transcription	Fetal Brain Male	brain
13	chr6:149577400-149580000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:149577400-149580600	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr6:149577600-149578600	Enhancers	Primary T cells from cord blood	blood
16	chr6:149578000-149579000	Weak transcription	Primary hematopoietic stem cells	blood
17	chr6:149578000-149579200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:149578000-149581000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:149578000-149581200	Enhancers	Monocytes-CD14+_RO01746	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links