Variant report

Variant	rs11974955
Chromosome Location	chr7:15631830-15631831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11979537	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1548311	0.91[AMR][1000 genomes]
rs16878568	0.83[EUR][1000 genomes]
rs17168884	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17168906	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs17168915	0.87[EUR][1000 genomes]
rs17168920	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs17168931	0.83[EUR][1000 genomes]
rs17168935	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs17168936	0.83[EUR][1000 genomes]
rs17168940	0.83[EUR][1000 genomes]
rs1859272	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56288788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57830137	0.87[EUR][1000 genomes]
rs6461190	0.84[AMR][1000 genomes]
rs67307027	0.89[EUR][1000 genomes]
rs73070210	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73298592	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73298595	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73300560	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73300564	0.87[EUR][1000 genomes]
rs73300577	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7807094	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv606299	chr7:15603853-15637887	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887735	chr7:15625992-15698178	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
5	nsv606300	chr7:15630754-15637713	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
6	nsv606301	chr7:15630871-15636977	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
7	nsv606302	chr7:15630871-15637005	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	nsv606303	chr7:15630871-15637403	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	nsv606304	chr7:15630871-15637565	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15630200-15648800	Weak transcription	Fetal Lung	lung

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