Variant report

Variant	rs73300564
Chromosome Location	chr7:15664095-15664096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11974955	0.87[EUR][1000 genomes]
rs11979537	0.87[EUR][1000 genomes]
rs16878568	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17168884	0.87[EUR][1000 genomes]
rs17168906	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17168915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17168920	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17168931	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17168935	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17168936	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17168940	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1859272	0.91[EUR][1000 genomes]
rs56288788	0.87[EUR][1000 genomes]
rs57830137	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73298592	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73298595	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73300560	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73300577	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7807094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv887735	chr7:15625992-15698178	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
4	nsv1018250	chr7:15648861-15667882	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15645400-15668200	Weak transcription	Right Ventricle	heart
2	chr7:15647800-15668000	Weak transcription	Fetal Stomach	stomach
3	chr7:15652000-15683400	Weak transcription	Adipose Nuclei	Adipose
4	chr7:15657400-15673000	Weak transcription	Psoas Muscle	Psoas
5	chr7:15660400-15664800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:15660800-15668200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:15661400-15665200	Weak transcription	HUVEC	blood vessel
8	chr7:15661400-15668000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:15662400-15664400	Strong transcription	Fetal Muscle Leg	muscle
10	chr7:15663400-15666400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:15663800-15666600	Strong transcription	Fetal Muscle Trunk	muscle
12	chr7:15664000-15664200	ZNF genes & repeats	Left Ventricle	heart
13	chr7:15664000-15664200	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
14	chr7:15664000-15664400	Genic enhancers	Osteobl	bone
15	chr7:15664000-15666000	Genic enhancers	Fetal Lung	lung
16	chr7:15664000-15666600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr7:15664000-15666800	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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