Variant report

Variant	rs17168931
Chromosome Location	chr7:15669296-15669297
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11974955	0.83[EUR][1000 genomes]
rs11979537	0.83[EUR][1000 genomes]
rs16878568	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17168884	0.83[EUR][1000 genomes]
rs17168906	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17168915	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17168920	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17168935	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17168936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17168940	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1859272	0.87[EUR][1000 genomes]
rs56288788	0.83[EUR][1000 genomes]
rs57830137	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73298592	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73298595	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73300560	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73300564	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73300577	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7807094	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv887735	chr7:15625992-15698178	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
4	nsv830911	chr7:15666307-15817662	Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv428501	chr7:15666307-15817662	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15652000-15683400	Weak transcription	Adipose Nuclei	Adipose
2	chr7:15657400-15673000	Weak transcription	Psoas Muscle	Psoas
3	chr7:15666600-15682600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr7:15667800-15669600	Enhancers	Osteobl	bone
5	chr7:15667800-15670000	Enhancers	NHDF-Ad	bronchial
6	chr7:15668000-15669400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr7:15668000-15670600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:15668200-15669600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:15668400-15677000	Weak transcription	Left Ventricle	heart
10	chr7:15668600-15676200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:15668800-15669800	Weak transcription	NHLF	lung
12	chr7:15669200-15669600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr7:15669200-15669800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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