Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11974955	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1548311	0.83[AMR][1000 genomes]
rs16878568	0.83[EUR][1000 genomes]
rs17168884	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17168906	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs17168915	0.87[EUR][1000 genomes]
rs17168920	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs17168931	0.83[EUR][1000 genomes]
rs17168935	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs17168936	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs17168940	0.83[EUR][1000 genomes]
rs1859272	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56288788	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57830137	0.87[EUR][1000 genomes]
rs67307027	0.81[EUR][1000 genomes]
rs73070210	0.80[AMR][1000 genomes]
rs73298592	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73298595	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73300560	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73300564	0.87[EUR][1000 genomes]
rs73300577	0.93[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7807094	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv887735	chr7:15625992-15698178	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
4	nsv464392	chr7:15642053-15654614	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
5	nsv606310	chr7:15642053-15654614	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15630200-15648800	Weak transcription	Fetal Lung	lung
2	chr7:15640000-15651200	Weak transcription	Adipose Nuclei	Adipose
3	chr7:15640000-15662400	Weak transcription	Fetal Muscle Leg	muscle
4	chr7:15640000-15663800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr7:15641800-15642400	Enhancers	Fetal Brain Female	brain
6	chr7:15641800-15643000	Enhancers	Fetal Heart	heart
7	chr7:15642000-15643400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:15642000-15643400	Enhancers	NHDF-Ad	bronchial

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