Variant report

Variant	rs11977416
Chromosome Location	chr7:80000329-80000330
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10265717	0.88[YRI][hapmap]
rs11973671	1.00[YRI][hapmap]
rs11977813	1.00[YRI][hapmap]
rs11983158	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11984061	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12112912	1.00[AMR][1000 genomes]
rs1878214	0.89[YRI][hapmap]
rs306712	1.00[AMR][1000 genomes]
rs306720	1.00[AMR][1000 genomes]
rs55683109	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55936775	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55955977	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56070908	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56118905	1.00[AMR][1000 genomes]
rs56280525	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56321281	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59650177	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60477208	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61320349	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73708723	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711029	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711031	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711032	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711033	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7793201	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv831042	chr7:79984079-80122312	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv525104	chr7:79991029-80002223	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79998600-80000400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr7:79999800-80000400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:80000200-80000400	Active TSS	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links