Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:80010219-80010760	SK-N-SH	brain:	n/a	n/a
2	GATA3	chr7:80010173-80010902	SK-N-SH	brain:	n/a	n/a
3	EP300	chr7:80010346-80010665	SK-N-SH_RA	brain:	n/a	n/a
4	RXRA	chr7:80010236-80010840	SK-N-SH	brain:	n/a	n/a
5	FOSL2	chr7:80010125-80010766	SK-N-SH	brain:	n/a	n/a
6	EP300	chr7:80010188-80010813	SK-N-SH	brain:	n/a	n/a
7	TEAD4	chr7:80010069-80010867	SK-N-SH	brain:	n/a	n/a
8	TCF12	chr7:80010094-80010876	SK-N-SH	brain:	n/a	n/a
9	TCF12	chr7:80010199-80010925	SK-N-SH	brain:	n/a	n/a
10	GATA3	chr7:80010130-80010903	SK-N-SH	brain:	n/a	n/a
11	EP300	chr7:80010073-80010886	SK-N-SH	brain:	n/a	n/a
12	EP300	chr7:80009516-80011425	SK-N-SH	brain:	n/a	chr7:80009824-80009833 chr7:80009537-80009551
13	POLR2A	chr7:80010336-80010605	SK-N-SH	brain:	n/a	n/a
14	NFIC	chr7:80010192-80011017	SK-N-SH	brain:	n/a	n/a
15	PBX3	chr7:80010195-80010893	SK-N-SH	brain:	n/a	n/a
16	JUND	chr7:80010179-80010866	SK-N-SH	brain:	n/a	n/a
17	FOXM1	chr7:80010241-80010816	SK-N-SH	brain:	n/a	n/a
18	NFIC	chr7:80010219-80010846	SK-N-SH	brain:	n/a	n/a
19	JUND	chr7:80010122-80010833	SK-N-SH	brain:	n/a	n/a
20	PBX3	chr7:80010178-80010838	SK-N-SH	brain:	n/a	n/a
21	MEF2A	chr7:80010096-80010863	SK-N-SH	brain:	n/a	n/a
22	TEAD4	chr7:80010177-80010939	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
SNRPBP1	TF binding region

rSNPs within LD-proxies of this variant (count:21)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv831042	chr7:79984079-80122312	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80003200-80013600	Weak transcription	Gastric	stomach
2	chr7:80009000-80015000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:80009200-80010600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr7:80009200-80014600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr7:80009200-80017200	Weak transcription	Fetal Kidney	kidney
6	chr7:80009400-80010400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr7:80009400-80010400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr7:80009400-80014800	Weak transcription	NHLF	lung
9	chr7:80009400-80017000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:80009600-80011000	Weak transcription	HUVEC	blood vessel
11	chr7:80009800-80013600	Weak transcription	Liver	Liver

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