Variant report

Variant	rs55955977
Chromosome Location	chr7:79981687-79981688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11977416	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11983158	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11984061	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12112912	1.00[AMR][1000 genomes]
rs306712	1.00[AMR][1000 genomes]
rs306720	1.00[AMR][1000 genomes]
rs55683109	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55936775	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56070908	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56118905	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56280525	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56321281	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59650177	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60477208	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61320349	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73708723	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711029	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711031	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711032	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711033	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7793201	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79978400-79984600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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