Variant report

Variant	rs73711032
Chromosome Location	chr7:80014219-80014220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11977416	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11983158	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11984061	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12112912	1.00[AMR][1000 genomes]
rs306712	1.00[AMR][1000 genomes]
rs306720	1.00[AMR][1000 genomes]
rs55683109	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55936775	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55955977	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56070908	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56118905	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56280525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56321281	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59650177	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60477208	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61320349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73708723	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711029	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711031	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7793201	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv831042	chr7:79984079-80122312	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80009000-80015000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:80009200-80014600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr7:80009200-80017200	Weak transcription	Fetal Kidney	kidney
4	chr7:80009400-80014800	Weak transcription	NHLF	lung
5	chr7:80009400-80017000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:80012800-80016800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr7:80013600-80015200	Enhancers	Liver	Liver
8	chr7:80013600-80015200	Enhancers	Fetal Intestine Large	intestine
9	chr7:80013800-80014400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:80014200-80014800	Enhancers	HUVEC	blood vessel
11	chr7:80014200-80016400	Enhancers	Muscle Satellite Cultured Cells	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links