Variant report

Variant	rs59650177
Chromosome Location	chr7:80001622-80001623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11977416	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11983158	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11984061	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12112912	1.00[AMR][1000 genomes]
rs306712	1.00[AMR][1000 genomes]
rs306720	1.00[AMR][1000 genomes]
rs55683109	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55936775	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55955977	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56070908	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56118905	1.00[AMR][1000 genomes]
rs56280525	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56321281	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60477208	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61320349	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73708723	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711029	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711031	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711032	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711033	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7793201	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv831042	chr7:79984079-80122312	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv525104	chr7:79991029-80002223	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80000400-80003000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:80000400-80008000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:80001200-80001800	Enhancers	HSMMtube	muscle
4	chr7:80001200-80001800	Enhancers	NHLF	lung
5	chr7:80001200-80002800	Enhancers	HSMM	muscle
6	chr7:80001200-80003200	Enhancers	A549	lung
7	chr7:80001400-80002200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:80001400-80002600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr7:80001600-80001800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr7:80001600-80001800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:80001600-80001800	Enhancers	Liver	Liver
12	chr7:80001600-80002400	Enhancers	Osteobl	bone
13	chr7:80001600-80002600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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