Variant report

Variant	rs11982023
Chromosome Location	chr7:102735362-102735363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:102714716..102718005-chr7:102734624..102737524,3	MCF-7	breast:
2	chr7:102715186..102716937-chr7:102734053..102736983,2	K562	blood:
3	chr7:102715186..102716960-chr7:102734053..102738564,5	K562	blood:
4	chr7:102733228..102736205-chr7:102789279..102791780,2	MCF-7	breast:
5	chr7:102714750..102718299-chr7:102732426..102735665,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000161040	Chromatin interaction
ENSG00000161048	Chromatin interaction
ENSG00000170632	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11971929	0.90[AFR][1000 genomes]
rs11972502	0.90[AFR][1000 genomes]
rs11973562	0.90[AFR][1000 genomes]
rs11974005	0.90[AFR][1000 genomes]
rs11974281	0.90[AFR][1000 genomes]
rs11975065	0.90[AFR][1000 genomes]
rs11975660	0.90[AFR][1000 genomes]
rs11976126	0.90[AFR][1000 genomes]
rs11976417	0.90[AFR][1000 genomes]
rs11976834	0.90[AFR][1000 genomes]
rs11976930	0.90[AFR][1000 genomes]
rs11977138	0.90[AFR][1000 genomes]
rs11978386	0.90[AFR][1000 genomes]
rs11978758	0.80[AFR][1000 genomes]
rs11980103	0.90[AFR][1000 genomes]
rs11981275	0.90[AFR][1000 genomes]
rs11982764	0.90[AFR][1000 genomes]
rs11983809	0.90[AFR][1000 genomes]
rs34242908	0.90[AFR][1000 genomes]
rs6960968	0.90[AFR][1000 genomes]
rs6961134	0.90[AFR][1000 genomes]
rs6968109	0.90[AFR][1000 genomes]
rs6977986	0.90[AFR][1000 genomes]
rs6978106	0.90[AFR][1000 genomes]
rs6979483	0.90[AFR][1000 genomes]
rs7806654	0.90[AFR][1000 genomes]
rs7807780	0.80[AFR][1000 genomes]
rs9690892	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv526764	chr7:102701826-102737251	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102716400-102745400	Weak transcription	Spleen	Spleen
2	chr7:102716600-102735600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:102716600-102737600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:102716600-102746400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:102716600-102746600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:102716600-102746800	Weak transcription	Right Atrium	heart
7	chr7:102716600-102760200	Weak transcription	Lung	lung
8	chr7:102716600-102762200	Weak transcription	Colonic Mucosa	Colon
9	chr7:102716600-102768200	Weak transcription	Right Ventricle	heart
10	chr7:102716800-102753600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr7:102716800-102768400	Weak transcription	Stomach Mucosa	stomach
12	chr7:102717000-102746600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr7:102717000-102746800	Weak transcription	Fetal Heart	heart
14	chr7:102717600-102738600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:102717600-102770200	Weak transcription	Small Intestine	intestine
16	chr7:102717800-102768000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr7:102719400-102769600	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr7:102722200-102738600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr7:102722600-102738600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr7:102723000-102738200	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr7:102723400-102738600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr7:102723400-102738600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr7:102723400-102746400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr7:102723600-102738600	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr7:102723600-102746400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr7:102723800-102738600	Strong transcription	Fetal Thymus	thymus
27	chr7:102724000-102735800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr7:102724000-102745800	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr7:102724000-102760000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr7:102724000-102770200	Weak transcription	Psoas Muscle	Psoas
31	chr7:102724200-102735800	Strong transcription	Adipose Nuclei	Adipose
32	chr7:102725200-102770200	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr7:102725400-102753600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr7:102725600-102739400	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr7:102725600-102746400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr7:102725600-102746400	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr7:102725600-102760200	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr7:102725800-102737000	Weak transcription	Gastric	stomach
39	chr7:102725800-102770000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr7:102726200-102742000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr7:102727800-102753400	Weak transcription	Brain Angular Gyrus	brain
42	chr7:102727800-102768000	Weak transcription	Fetal Brain Male	brain
43	chr7:102728000-102735800	Weak transcription	Fetal Lung	lung
44	chr7:102728000-102737600	Weak transcription	HSMMtube	muscle
45	chr7:102728000-102760000	Weak transcription	Rectal Smooth Muscle	rectum
46	chr7:102728200-102737200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr7:102728600-102738000	Weak transcription	Colon Smooth Muscle	Colon
48	chr7:102728600-102753400	Weak transcription	NHDF-Ad	bronchial
49	chr7:102728800-102735600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr7:102729200-102735600	Weak transcription	Rectal Mucosa Donor 29	rectum

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