Variant report

Variant	rs11978386
Chromosome Location	chr7:102658137-102658138
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11971520	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11971729	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11971929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11972502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11973562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974839	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11975065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11975660	1.00[AFR][1000 genomes]
rs11976126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11976417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11976834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11976930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11977138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11978758	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11980103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11981275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11982023	0.90[AFR][1000 genomes]
rs11982764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11983809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11983992	1.00[AMR][1000 genomes]
rs13232845	1.00[AMR][1000 genomes]
rs34242908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6465897	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6952775	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6960968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6961134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6968109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6977986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6978106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6979483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7779454	1.00[AMR][1000 genomes]
rs7795941	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7802487	1.00[AMR][1000 genomes]
rs7806654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7806745	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7807780	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9690892	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	esv3374257	chr7:102636550-102671589	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102640400-102666800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:102655800-102658200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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