Variant report

Variant	rs11971520
Chromosome Location	chr7:102704239-102704240
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:102704001..102706200-chr7:102714762..102716967,2	K562	blood:
2	chr7:102691392..102694110-chr7:102703544..102706469,2	K562	blood:
3	chr7:102701175..102706120-chr7:102711307..102716730,7	K562	blood:
4	chr7:102611593..102615684-chr7:102700169..102704441,4	K562	blood:
5	chr7:102702765..102704335-chr7:102714764..102716771,2	MCF-7	breast:
6	chr7:102676967..102679361-chr7:102702578..102705004,2	K562	blood:
7	chr7:102389656..102391894-chr7:102702213..102705034,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000161040	Chromatin interaction
ENSG00000222011	Chromatin interaction
ENSG00000230257	Chromatin interaction
ENSG00000170632	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11971729	1.00[AMR][1000 genomes]
rs11971929	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11972502	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11973562	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974005	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974281	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974839	1.00[AMR][1000 genomes]
rs11975065	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11975660	0.85[AFR][1000 genomes]
rs11976126	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11976417	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11976834	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11976930	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11977138	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11978386	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11978758	1.00[AMR][1000 genomes]
rs11980103	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11981275	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11982764	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11983809	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11983992	1.00[AMR][1000 genomes]
rs13232845	1.00[AMR][1000 genomes]
rs34242908	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6465897	1.00[AMR][1000 genomes]
rs6952775	1.00[AMR][1000 genomes]
rs6959583	1.00[AMR][1000 genomes]
rs6960968	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6961134	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6968109	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6977986	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6978106	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6979483	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7795941	1.00[AMR][1000 genomes]
rs7802487	1.00[AMR][1000 genomes]
rs7806654	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7806745	1.00[AMR][1000 genomes]
rs7807780	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	esv1793320	chr7:102677917-102706209	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv526764	chr7:102701826-102737251	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102679200-102713800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:102684200-102708000	Weak transcription	Pancreas	Pancrea
3	chr7:102692800-102712800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:102702200-102713800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:102702200-102714600	Weak transcription	Ovary	ovary

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