Variant report

Variant	rs11974839
Chromosome Location	chr7:102774198-102774199
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:102773371..102777248-chr7:102787778..102791965,5	K562	blood:
2	chr7:102761173..102767210-chr7:102768594..102775189,9	K562	blood:
3	chr7:102770229..102775157-chr7:102775428..102783246,10	K562	blood:

Variant related genes	Relation type
ENSG00000161048	Chromatin interaction
ENSG00000224415	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11971520	1.00[AMR][1000 genomes]
rs11971729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11971929	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11972502	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11973562	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974005	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974281	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11975065	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11975660	0.89[AFR][1000 genomes]
rs11976126	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11976417	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11976834	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11976930	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11977138	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11978386	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11978758	1.00[AMR][1000 genomes]
rs11980103	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11981275	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11982764	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11983809	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11983992	1.00[AMR][1000 genomes]
rs13232845	1.00[AMR][1000 genomes]
rs34242908	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6465897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6952775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6959583	1.00[AMR][1000 genomes]
rs6960968	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6961134	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6968109	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6977986	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6978106	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6979483	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7795941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7802487	1.00[AMR][1000 genomes]
rs7806654	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7806745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7807780	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102747400-102781800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:102747600-102775200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:102747600-102789200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:102755600-102775400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:102760600-102782000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:102760600-102782200	Weak transcription	HSMM	muscle
7	chr7:102764000-102781800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr7:102764200-102787000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:102767200-102786000	Weak transcription	GM12878-XiMat	blood
10	chr7:102768600-102774200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr7:102768800-102775200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:102768800-102775600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr7:102768800-102775800	Weak transcription	Gastric	stomach
14	chr7:102768800-102781800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:102768800-102782000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr7:102768800-102782000	Weak transcription	Pancreas	Pancrea
17	chr7:102768800-102786000	Weak transcription	Brain Germinal Matrix	brain
18	chr7:102768800-102786200	Weak transcription	Fetal Heart	heart
19	chr7:102768800-102786600	Weak transcription	Lung	lung
20	chr7:102768800-102788600	Weak transcription	Right Ventricle	heart
21	chr7:102769000-102774200	Weak transcription	NH-A	brain
22	chr7:102769000-102775200	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr7:102769000-102775200	Weak transcription	NHDF-Ad	bronchial
24	chr7:102769000-102775400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr7:102769000-102775400	Weak transcription	Fetal Brain Female	brain
26	chr7:102769000-102775800	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr7:102769000-102775800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr7:102769000-102781400	Weak transcription	Dnd41	blood
29	chr7:102769000-102782000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr7:102769000-102786000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr7:102769000-102786000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr7:102769000-102786000	Weak transcription	Fetal Brain Male	brain
33	chr7:102769000-102786600	Weak transcription	Stomach Smooth Muscle	stomach
34	chr7:102769000-102786800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr7:102769000-102787000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr7:102769200-102775200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr7:102769200-102775200	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr7:102769200-102775400	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr7:102769200-102775400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr7:102769200-102775600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr7:102769200-102775800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr7:102769200-102781200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr7:102769200-102781800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr7:102769200-102781800	Weak transcription	Fetal Muscle Trunk	muscle
45	chr7:102769200-102781800	Weak transcription	Fetal Thymus	thymus
46	chr7:102769200-102786000	Weak transcription	Duodenum Mucosa	Duodenum
47	chr7:102769200-102786600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr7:102769200-102786800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr7:102769200-102787000	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr7:102769200-102787000	Weak transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links