Variant report

Variant	rs6959583
Chromosome Location	chr7:102918508-102918509
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11971520	1.00[AMR][1000 genomes]
rs11971729	1.00[AMR][1000 genomes]
rs11974839	1.00[AMR][1000 genomes]
rs11976834	1.00[AMR][1000 genomes]
rs11977138	1.00[AMR][1000 genomes]
rs11983992	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34242908	1.00[AMR][1000 genomes]
rs6465897	1.00[AMR][1000 genomes]
rs6952775	1.00[AMR][1000 genomes]
rs6960968	1.00[AMR][1000 genomes]
rs6961134	1.00[AMR][1000 genomes]
rs6968109	1.00[AMR][1000 genomes]
rs6977986	1.00[AMR][1000 genomes]
rs6978106	1.00[AMR][1000 genomes]
rs6979483	1.00[AMR][1000 genomes]
rs7795941	1.00[AMR][1000 genomes]
rs7802487	1.00[AMR][1000 genomes]
rs7806745	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv831084	chr7:102778908-102964970	Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv1794417	chr7:102814101-102928545	Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv981567	chr7:102850992-102924834	Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102907400-102919400	Weak transcription	Fetal Brain Male	brain
2	chr7:102907800-102919600	Weak transcription	Fetal Thymus	thymus
3	chr7:102907800-102920000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr7:102909400-102920200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:102910600-102919600	Weak transcription	Fetal Stomach	stomach
6	chr7:102912800-102918800	Weak transcription	Fetal Brain Female	brain
7	chr7:102913000-102919600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:102913000-102920000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr7:102915600-102919400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:102915600-102920200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr7:102918200-102918800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr7:102918400-102918600	Enhancers	Brain Germinal Matrix	brain
13	chr7:102918400-102918600	Flanking Active TSS	Dnd41	blood
14	chr7:102918400-102919000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr7:102918400-102919000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr7:102918400-102919800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr7:102918400-102921400	Active TSS	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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