Variant report

Variant	rs11977138
Chromosome Location	chr7:102702514-102702515
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:102673845..102676724-chr7:102700499..102703034,2	K562	blood:
2	chr7:102701175..102706120-chr7:102711307..102716730,7	K562	blood:
3	chr7:102696664..102700307-chr7:102700461..102702793,3	K562	blood:
4	chr7:102700472..102704073-chr7:102705229..102707917,4	K562	blood:
5	chr7:102611593..102615684-chr7:102700169..102704441,4	K562	blood:
6	chr7:102608423..102610942-chr7:102700411..102702582,3	K562	blood:
7	chr7:102389656..102391894-chr7:102702213..102705034,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000170632	Chromatin interaction
ENSG00000230257	Chromatin interaction
ENSG00000161040	Chromatin interaction
ENSG00000222011	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11971520	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11971729	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11971929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11972172	1.00[YRI][hapmap]
rs11972502	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11973562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974005	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974281	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974839	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11975065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11975660	1.00[AFR][1000 genomes]
rs11976126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11976417	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11976834	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11976930	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11978386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11978758	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11980103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11980194	1.00[YRI][hapmap]
rs11981275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11982023	0.90[AFR][1000 genomes]
rs11982122	1.00[MKK][hapmap]
rs11982764	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11983809	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11983992	1.00[AMR][1000 genomes]
rs13232845	1.00[AMR][1000 genomes]
rs34242908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6465897	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6952775	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6959583	1.00[AMR][1000 genomes]
rs6960968	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6961134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6968109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6977986	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6978106	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6979483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7795941	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7802487	1.00[AMR][1000 genomes]
rs7806654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7806745	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7807780	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9690892	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	esv1793320	chr7:102677917-102706209	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv526764	chr7:102701826-102737251	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102679200-102713800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:102684200-102708000	Weak transcription	Pancreas	Pancrea
3	chr7:102692800-102712800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:102701600-102702800	Enhancers	HUVEC	blood vessel
5	chr7:102701800-102702800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:102701800-102702800	Enhancers	K562	blood
7	chr7:102702000-102702800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr7:102702000-102702800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr7:102702000-102702800	Enhancers	NH-A	brain
10	chr7:102702200-102702600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:102702200-102713800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:102702200-102714600	Weak transcription	Ovary	ovary

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