Variant report

Variant	rs6465897
Chromosome Location	chr7:102753812-102753813
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11971520	1.00[AMR][1000 genomes]
rs11971729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11971929	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11972502	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11973562	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974005	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974281	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11975065	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11975660	0.89[AFR][1000 genomes]
rs11976126	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11976417	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11976834	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11976930	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11977138	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11978386	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11978758	1.00[AMR][1000 genomes]
rs11980103	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11981275	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11982764	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11983809	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11983992	1.00[AMR][1000 genomes]
rs13232845	1.00[AMR][1000 genomes]
rs34242908	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6952775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6959583	1.00[AMR][1000 genomes]
rs6960968	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6961134	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6968109	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6977986	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6978106	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6979483	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7795941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7802487	1.00[AMR][1000 genomes]
rs7806654	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7806745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7807780	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102716600-102760200	Weak transcription	Lung	lung
2	chr7:102716600-102762200	Weak transcription	Colonic Mucosa	Colon
3	chr7:102716600-102768200	Weak transcription	Right Ventricle	heart
4	chr7:102716800-102768400	Weak transcription	Stomach Mucosa	stomach
5	chr7:102717600-102770200	Weak transcription	Small Intestine	intestine
6	chr7:102717800-102768000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr7:102719400-102769600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr7:102724000-102760000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr7:102724000-102770200	Weak transcription	Psoas Muscle	Psoas
10	chr7:102725200-102770200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr7:102725600-102760200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr7:102725800-102770000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr7:102727800-102768000	Weak transcription	Fetal Brain Male	brain
14	chr7:102728000-102760000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr7:102730200-102760200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr7:102730200-102769600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr7:102734200-102770600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr7:102736000-102768000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr7:102737800-102754800	Weak transcription	Fetal Kidney	kidney
20	chr7:102738400-102757400	Weak transcription	Left Ventricle	heart
21	chr7:102738400-102767800	Weak transcription	Pancreas	Pancrea
22	chr7:102738400-102768400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr7:102738400-102773600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:102738600-102761200	Weak transcription	Placenta	Placenta
25	chr7:102741400-102770600	Weak transcription	HUVEC	blood vessel
26	chr7:102741800-102759200	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr7:102742200-102757200	Weak transcription	K562	blood
28	chr7:102743000-102761800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr7:102743600-102770200	Weak transcription	Colon Smooth Muscle	Colon
30	chr7:102744400-102759200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr7:102744400-102760200	Weak transcription	GM12878-XiMat	blood
32	chr7:102745000-102754800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr7:102745000-102755000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr7:102745000-102760000	Weak transcription	Aorta	Aorta
35	chr7:102745200-102754800	Weak transcription	Adipose Nuclei	Adipose
36	chr7:102745600-102760200	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr7:102745800-102755400	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr7:102745800-102756400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr7:102746000-102754800	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr7:102746000-102759200	Weak transcription	HSMM	muscle
41	chr7:102746600-102755000	Weak transcription	Primary B cells from cord blood	blood
42	chr7:102747200-102759400	Weak transcription	Gastric	stomach
43	chr7:102747200-102762600	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr7:102747200-102768200	Weak transcription	Fetal Heart	heart
45	chr7:102747400-102758800	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr7:102747400-102759000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr7:102747400-102766400	Weak transcription	Brain Germinal Matrix	brain
48	chr7:102747400-102781800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr7:102747600-102754800	Weak transcription	Liver	Liver
50	chr7:102747600-102755200	Weak transcription	H1 Cell Line	embryonic stem cell

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