Variant report

Variant	rs6977986
Chromosome Location	chr7:102698359-102698360
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:102696119..102699764-chr7:102712754..102715415,3	K562	blood:
2	chr7:102686325..102688717-chr7:102697230..102700034,3	K562	blood:
3	chr7:102694258..102697387-chr7:102697873..102700053,4	K562	blood:
4	chr7:102616376..102618625-chr7:102696676..102699468,2	K562	blood:
5	chr7:102618985..102623059-chr7:102696660..102699924,3	K562	blood:
6	chr7:102696664..102700307-chr7:102700461..102702793,3	K562	blood:

Variant related genes	Relation type
ENSG00000170632	Chromatin interaction
ENSG00000161040	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11971520	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11971729	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11971929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11972172	1.00[YRI][hapmap]
rs11972502	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11973562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974005	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974281	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974839	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11975065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11975660	1.00[AFR][1000 genomes]
rs11976126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11976417	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11976834	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11976930	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11977138	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11978386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11978758	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11980103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11980194	1.00[YRI][hapmap]
rs11981275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11982023	0.90[AFR][1000 genomes]
rs11982764	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11983809	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11983992	1.00[AMR][1000 genomes]
rs13232845	1.00[AMR][1000 genomes]
rs34242908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6465897	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6952775	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6959583	1.00[AMR][1000 genomes]
rs6960968	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6961134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6968109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6978106	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6979483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7795941	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7802487	1.00[AMR][1000 genomes]
rs7806654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7806745	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7807780	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9690892	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	esv1793320	chr7:102677917-102706209	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102679200-102713800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:102684200-102708000	Weak transcription	Pancreas	Pancrea
3	chr7:102691400-102698400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:102691400-102701800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:102692800-102698800	Weak transcription	Thymus	Thymus
6	chr7:102692800-102712800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr7:102693800-102698400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:102694800-102702000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr7:102695400-102700200	Weak transcription	Aorta	Aorta
10	chr7:102698200-102698600	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr7:102698200-102699000	Enhancers	Fetal Thymus	thymus

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