Variant report

Variant	rs7807780
Chromosome Location	chr7:102684115-102684116
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102683119..102685488-chr7:102687684..102690602,4	K562	blood:
2	chr7:102612993..102615642-chr7:102682873..102685524,2	K562	blood:

Variant related genes	Relation type
ENSG00000161040	Chromatin interaction
ENSG00000230257	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11971520	1.00[AMR][1000 genomes]
rs11971729	1.00[AMR][1000 genomes]
rs11971929	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11972502	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11973562	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974005	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974281	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974839	1.00[AMR][1000 genomes]
rs11975065	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11975660	0.90[AFR][1000 genomes]
rs11976126	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11976417	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11976834	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11976930	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11977138	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11978386	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11978758	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11980103	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11981275	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11982023	0.80[AFR][1000 genomes]
rs11982764	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11983809	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11983992	1.00[AMR][1000 genomes]
rs13232845	1.00[AMR][1000 genomes]
rs34242908	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6465897	1.00[AMR][1000 genomes]
rs6952775	1.00[AMR][1000 genomes]
rs6960968	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6961134	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6968109	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6977986	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6978106	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6979483	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7795941	1.00[AMR][1000 genomes]
rs7802487	1.00[AMR][1000 genomes]
rs7806654	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7806745	1.00[AMR][1000 genomes]
rs9690892	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	esv1793320	chr7:102677917-102706209	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102678600-102684600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:102679200-102713800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:102682600-102688200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:102683400-102695800	Weak transcription	Fetal Kidney	kidney
5	chr7:102683600-102684200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
6	chr7:102683800-102684200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr7:102684000-102684200	ZNF genes & repeats	Pancreas	Pancrea

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