Variant report

Variant	rs11983992
Chromosome Location	chr7:102877242-102877243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11971520	1.00[AMR][1000 genomes]
rs11971729	1.00[AMR][1000 genomes]
rs11971929	1.00[AMR][1000 genomes]
rs11973562	1.00[AMR][1000 genomes]
rs11974005	1.00[AMR][1000 genomes]
rs11974839	1.00[AMR][1000 genomes]
rs11976417	1.00[AMR][1000 genomes]
rs11976834	1.00[AMR][1000 genomes]
rs11977138	1.00[AMR][1000 genomes]
rs11978386	1.00[AMR][1000 genomes]
rs11978758	1.00[AMR][1000 genomes]
rs11981275	1.00[AMR][1000 genomes]
rs13232845	1.00[AMR][1000 genomes]
rs34242908	1.00[AMR][1000 genomes]
rs6465897	1.00[AMR][1000 genomes]
rs6952775	1.00[AMR][1000 genomes]
rs6959583	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6960968	1.00[AMR][1000 genomes]
rs6961134	1.00[AMR][1000 genomes]
rs6968109	1.00[AMR][1000 genomes]
rs6977986	1.00[AMR][1000 genomes]
rs6978106	1.00[AMR][1000 genomes]
rs6979483	1.00[AMR][1000 genomes]
rs7795941	1.00[AMR][1000 genomes]
rs7802487	1.00[AMR][1000 genomes]
rs7806654	1.00[AMR][1000 genomes]
rs7806745	1.00[AMR][1000 genomes]
rs7807780	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv831084	chr7:102778908-102964970	Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv1794417	chr7:102814101-102928545	Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv981567	chr7:102850992-102924834	Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv499230	chr7:102875319-102877886	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102876600-102881000	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links