Variant report

Variant	rs11984591
Chromosome Location	chr8:61399607-61399608
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr8:61399460-61399856	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
RNU6-1202P	TF binding region

Extended variants
information (count: 75 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10504313	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11984682	1.00[ASN][1000 genomes]
rs11985737	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs11987024	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11988169	1.00[ASN][1000 genomes]
rs11988323	1.00[ASN][1000 genomes]
rs11988389	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11991778	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11996337	1.00[ASN][1000 genomes]
rs11997369	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16926067	1.00[MEX][hapmap]
rs16926228	0.85[ASN][1000 genomes]
rs16926248	1.00[ASN][1000 genomes]
rs16926250	0.93[ASN][1000 genomes]
rs16926256	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16926277	1.00[ASN][1000 genomes]
rs16926304	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs16926305	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs16926308	1.00[ASN][1000 genomes]
rs16926311	1.00[ASN][1000 genomes]
rs16926338	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1893277	0.95[LWK][hapmap];0.92[YRI][hapmap]
rs2326572	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2930038	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2930041	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs2946149	1.00[ASN][1000 genomes]
rs2946150	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2981283	1.00[ASN][1000 genomes]
rs60075768	0.87[ASN][1000 genomes]
rs60440859	0.85[ASN][1000 genomes]
rs60504642	1.00[ASN][1000 genomes]
rs61174790	1.00[ASN][1000 genomes]
rs61291329	1.00[ASN][1000 genomes]
rs6471887	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6986664	0.92[YRI][hapmap]
rs6987831	1.00[ASN][1000 genomes]
rs7000882	1.00[ASN][1000 genomes]
rs7001063	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7005259	1.00[ASN][1000 genomes]
rs7016173	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs73243810	1.00[ASN][1000 genomes]
rs73257409	1.00[ASN][1000 genomes]
rs73257414	1.00[ASN][1000 genomes]
rs73257427	1.00[ASN][1000 genomes]
rs73257433	1.00[ASN][1000 genomes]
rs73257434	1.00[ASN][1000 genomes]
rs73257435	1.00[ASN][1000 genomes]
rs73257440	1.00[ASN][1000 genomes]
rs73257481	1.00[ASN][1000 genomes]
rs73257484	1.00[ASN][1000 genomes]
rs73257486	1.00[ASN][1000 genomes]
rs73257487	1.00[ASN][1000 genomes]
rs73257495	0.85[ASN][1000 genomes]
rs73257499	1.00[ASN][1000 genomes]
rs73259425	1.00[ASN][1000 genomes]
rs73259430	1.00[ASN][1000 genomes]
rs73259438	1.00[ASN][1000 genomes]
rs73259453	1.00[ASN][1000 genomes]
rs73259488	1.00[ASN][1000 genomes]
rs73259499	1.00[ASN][1000 genomes]
rs73261204	1.00[ASN][1000 genomes]
rs73261219	1.00[ASN][1000 genomes]
rs73261234	1.00[ASN][1000 genomes]
rs73261269	1.00[ASN][1000 genomes]
rs7341555	1.00[ASN][1000 genomes]
rs7341633	1.00[ASN][1000 genomes]
rs7815886	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7816273	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7825285	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7827528	1.00[ASN][1000 genomes]
rs7834982	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs7839008	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs922607	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv971314	chr8:61359401-61436209	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11984591	FHL1	trans	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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