Variant report

Variant	rs7827528
Chromosome Location	chr8:61432239-61432240
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:61432161-61432269	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000251396	TF binding region

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10504313	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11984591	1.00[ASN][1000 genomes]
rs11984682	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11985737	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11987024	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11988169	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11988323	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11988389	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11991778	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11996337	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11997369	0.85[ASN][1000 genomes]
rs16926228	0.85[ASN][1000 genomes]
rs16926248	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16926250	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs16926256	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16926277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16926304	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16926305	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16926308	1.00[ASN][1000 genomes]
rs16926311	1.00[ASN][1000 genomes]
rs16926338	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2326572	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2930038	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2930041	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2946149	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2946150	1.00[ASN][1000 genomes]
rs2981283	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60075768	0.87[ASN][1000 genomes]
rs60440859	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs60504642	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61174790	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61291329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6471887	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6987831	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7000882	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7001063	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7005259	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7016173	1.00[ASN][1000 genomes]
rs73243810	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257409	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257414	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257427	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257433	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257434	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257435	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257440	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257481	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257484	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73257486	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257487	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257495	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs73257499	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259425	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259430	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259438	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259453	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259488	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259499	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73261204	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73261219	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73261234	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73261269	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7341555	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7341633	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7815886	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7816273	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7825285	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7834982	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7839008	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv971314	chr8:61359401-61436209	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv530383	chr8:61431756-61605551	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61428600-61432400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:61428600-61434400	Active TSS	GM12878-XiMat	blood
3	chr8:61428800-61432400	Active TSS	HSMMtube	muscle
4	chr8:61428800-61432600	Active TSS	Right Ventricle	heart
5	chr8:61428800-61433200	Active TSS	Right Atrium	heart
6	chr8:61430200-61432400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
7	chr8:61430400-61432600	Flanking Active TSS	Fetal Brain Female	brain
8	chr8:61430400-61432800	Flanking Active TSS	Primary T cells from cord blood	blood
9	chr8:61430600-61432400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr8:61430600-61432400	Flanking Active TSS	Duodenum Mucosa	Duodenum
11	chr8:61430600-61433400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr8:61430800-61432600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:61430800-61432600	Flanking Active TSS	Dnd41	blood
14	chr8:61430800-61433000	Flanking Active TSS	HUVEC	blood vessel
15	chr8:61430800-61433200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr8:61431000-61432600	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr8:61431000-61432800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:61431000-61433400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr8:61431000-61433800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr8:61431000-61433800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr8:61431000-61435400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr8:61431000-61436600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr8:61431000-61438200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr8:61431200-61432400	Flanking Active TSS	K562	blood
25	chr8:61431200-61432600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
26	chr8:61431200-61432600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr8:61431200-61433000	Flanking Active TSS	Fetal Heart	heart
28	chr8:61431200-61433200	Flanking Active TSS	Adipose Nuclei	Adipose
29	chr8:61431200-61433200	Enhancers	Stomach Mucosa	stomach
30	chr8:61431200-61433400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr8:61431200-61433400	Weak transcription	Fetal Muscle Trunk	muscle
32	chr8:61431200-61434800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr8:61431200-61438200	Enhancers	Primary B cells from peripheral blood	blood
34	chr8:61431400-61432400	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr8:61431400-61432600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
36	chr8:61431400-61432600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr8:61431400-61432600	Flanking Active TSS	Brain Anterior Caudate	brain
38	chr8:61431400-61432800	Flanking Active TSS	Osteobl	bone
39	chr8:61431400-61433000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
40	chr8:61431400-61433000	Flanking Active TSS	A549	lung
41	chr8:61431400-61433200	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr8:61431600-61432600	Flanking Active TSS	NH-A	brain
43	chr8:61431600-61438200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
44	chr8:61431600-61441600	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr8:61431800-61432400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
46	chr8:61431800-61432600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr8:61431800-61432600	Enhancers	Primary hematopoietic stem cells	blood
48	chr8:61431800-61435600	Enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr8:61431800-61446800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr8:61432000-61432400	Enhancers	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links