Variant report

Variant	rs2946149
Chromosome Location	chr8:61543513-61543514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61540133..61541635-chr8:61542072..61544913,2	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10504313	1.00[CHB][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11984591	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11984682	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11985737	1.00[CHB][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11987024	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11988169	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11988323	1.00[ASN][1000 genomes]
rs11988389	1.00[CHB][hapmap];0.81[YRI][hapmap];1.00[ASN][1000 genomes]
rs11991778	1.00[CHB][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11996337	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11997369	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs16926228	0.85[ASN][1000 genomes]
rs16926248	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16926250	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs16926256	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16926277	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16926304	1.00[CHB][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16926305	1.00[CHB][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16926308	1.00[ASN][1000 genomes]
rs16926311	1.00[ASN][1000 genomes]
rs16926338	1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2326572	1.00[CHB][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2930038	1.00[CHB][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2930041	1.00[CHB][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2946150	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2981283	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60075768	0.87[ASN][1000 genomes]
rs60440859	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs60504642	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61174790	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61291329	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6471887	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6987831	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7000882	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7001063	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7005259	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7016173	1.00[CHB][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73243810	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257409	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257414	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257427	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257433	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257434	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257435	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257440	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257481	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257484	1.00[ASN][1000 genomes]
rs73257486	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257487	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257495	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs73257499	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259425	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259430	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259438	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259453	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259488	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259499	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73261204	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73261219	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73261234	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73261269	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7341555	1.00[ASN][1000 genomes]
rs7341633	1.00[ASN][1000 genomes]
rs7815886	1.00[CHB][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7816273	1.00[CHB][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7825285	1.00[CHB][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7827528	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7834982	1.00[CHB][hapmap];0.96[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7839008	1.00[CHB][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv530383	chr8:61431756-61605551	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv831335	chr8:61497540-61688992	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv890945	chr8:61522008-61707725	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61538200-61544000	Weak transcription	Primary B cells from cord blood	blood
2	chr8:61542000-61543600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:61542800-61543600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:61542800-61545800	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links