Variant report

Variant	rs73257409
Chromosome Location	chr8:61407904-61407905
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10504313	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11984591	1.00[ASN][1000 genomes]
rs11984682	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11985737	1.00[ASN][1000 genomes]
rs11987024	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11988169	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11988323	1.00[ASN][1000 genomes]
rs11988389	1.00[ASN][1000 genomes]
rs11991778	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11996337	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11997369	0.85[ASN][1000 genomes]
rs16926228	0.85[ASN][1000 genomes]
rs16926248	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16926250	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs16926256	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16926277	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16926304	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16926305	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16926308	1.00[ASN][1000 genomes]
rs16926311	1.00[ASN][1000 genomes]
rs16926338	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2326572	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2930038	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2930041	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2946149	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2946150	1.00[ASN][1000 genomes]
rs2981283	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60075768	0.87[ASN][1000 genomes]
rs60440859	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs60504642	1.00[ASN][1000 genomes]
rs61174790	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61291329	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6471887	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6987831	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7000882	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7001063	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7005259	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7016173	1.00[ASN][1000 genomes]
rs73243810	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257414	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257427	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257434	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257481	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257484	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257486	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257487	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257495	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs73257499	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259425	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259430	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259438	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259453	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259488	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259499	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73261204	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73261219	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73261234	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73261269	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7341555	1.00[ASN][1000 genomes]
rs7341633	1.00[ASN][1000 genomes]
rs7815886	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7816273	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7825285	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7827528	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7834982	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7839008	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv971314	chr8:61359401-61436209	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61405400-61415200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:61406800-61410400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:61407000-61408200	Enhancers	Placenta	Placenta
4	chr8:61407600-61408200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr8:61407800-61408000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:61407800-61408200	Enhancers	HMEC	breast

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