Variant report

Variant	rs2981283
Chromosome Location	chr8:61511668-61511669
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61511100..61513643-chr8:61515847..61518764,3	MCF-7	breast:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10504313	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11984591	1.00[ASN][1000 genomes]
rs11984682	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11985737	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11987024	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11988169	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11988323	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11988389	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11991778	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11996337	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11997369	0.85[ASN][1000 genomes]
rs16926228	0.85[ASN][1000 genomes]
rs16926248	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16926250	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs16926256	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16926277	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16926304	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16926305	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16926308	1.00[ASN][1000 genomes]
rs16926311	1.00[ASN][1000 genomes]
rs16926338	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2326572	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2930038	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2930041	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2946149	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2946150	1.00[ASN][1000 genomes]
rs60075768	0.87[ASN][1000 genomes]
rs60440859	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs60504642	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61174790	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61291329	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6471887	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6987831	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7000882	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7001063	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7005259	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7016173	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73243810	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257409	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257414	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257427	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257433	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257434	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257435	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257440	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257481	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257484	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73257486	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257487	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257495	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs73257499	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259425	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259430	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259438	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259453	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259488	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259499	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73261204	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73261219	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73261234	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73261269	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7341555	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7341633	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7815886	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7816273	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7825285	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7827528	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7834982	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7839008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv530383	chr8:61431756-61605551	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv870164	chr8:61484657-61529482	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv6218	chr8:61485410-61530933	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv1796952	chr8:61492893-61531418	Strong transcription Genic enhancers Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv831335	chr8:61497540-61688992	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61466400-61516800	Weak transcription	Stomach Mucosa	stomach
2	chr8:61467200-61515400	Weak transcription	Fetal Brain Male	brain
3	chr8:61476200-61517000	Weak transcription	Brain Angular Gyrus	brain
4	chr8:61481000-61527400	Weak transcription	Psoas Muscle	Psoas
5	chr8:61483800-61515800	Weak transcription	Colonic Mucosa	Colon
6	chr8:61485400-61515400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr8:61489400-61514000	Weak transcription	Right Ventricle	heart
8	chr8:61491400-61517000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr8:61493600-61518000	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr8:61495600-61516600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:61495600-61517000	Weak transcription	Pancreas	Pancrea
12	chr8:61495600-61517200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:61495600-61517600	Weak transcription	Spleen	Spleen
14	chr8:61496400-61515400	Strong transcription	Primary B cells from peripheral blood	blood
15	chr8:61496600-61515000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr8:61496800-61515200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr8:61496800-61517200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr8:61497000-61511800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:61497400-61512000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:61498200-61517200	Weak transcription	Gastric	stomach
21	chr8:61499400-61516600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr8:61499600-61514000	Weak transcription	Fetal Stomach	stomach
23	chr8:61500400-61542200	Weak transcription	Hela-S3	cervix
24	chr8:61501200-61512200	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr8:61503400-61517200	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr8:61504000-61517000	Strong transcription	Fetal Thymus	thymus
27	chr8:61504400-61516600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr8:61504400-61517200	Strong transcription	Adipose Nuclei	Adipose
29	chr8:61504800-61515400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr8:61505600-61515200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr8:61506000-61516800	Weak transcription	Small Intestine	intestine
32	chr8:61506000-61517000	Weak transcription	Esophagus	oesophagus
33	chr8:61506000-61523200	Weak transcription	Fetal Heart	heart
34	chr8:61506000-61532200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr8:61506200-61514400	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr8:61506200-61515200	Weak transcription	K562	blood
37	chr8:61506200-61516200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr8:61506200-61517200	Weak transcription	Aorta	Aorta
39	chr8:61506200-61517200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr8:61506400-61512800	Weak transcription	Brain Substantia Nigra	brain
41	chr8:61506400-61514000	Weak transcription	HepG2	liver
42	chr8:61506400-61532400	Weak transcription	NHLF	lung
43	chr8:61506600-61517400	Weak transcription	Brain Anterior Caudate	brain
44	chr8:61506800-61515200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr8:61506800-61515200	Weak transcription	HMEC	breast
46	chr8:61506800-61517600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr8:61506800-61517600	Weak transcription	Brain Cingulate Gyrus	brain
48	chr8:61507000-61512000	Weak transcription	NH-A	brain
49	chr8:61507000-61515200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr8:61507000-61515400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links