Variant report

Variant	rs12005080
Chromosome Location	chr9:101744413-101744414
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101739430..101741862-chr9:101743138..101745419,2	K562	blood:
2	chr9:101742011..101744498-chr9:101748952..101750643,2	MCF-7	breast:
3	chr9:101744002..101749570-chr9:101754118..101758389,6	K562	blood:
4	chr9:101743138..101745220-chr9:101746552..101748819,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12554684	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1543709	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16918106	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16918113	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2075662	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2900147	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3780624	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4327910	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4743303	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4743307	0.85[EUR][1000 genomes]
rs56997979	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57410362	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59112541	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs989392	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6635	chr9:101728257-101773253	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101728000-101749400	Weak transcription	Aorta	Aorta
2	chr9:101737800-101760800	Weak transcription	Gastric	stomach
3	chr9:101740000-101746200	Weak transcription	Psoas Muscle	Psoas
4	chr9:101740000-101746400	Weak transcription	Fetal Stomach	stomach
5	chr9:101740400-101746200	Weak transcription	Right Ventricle	heart
6	chr9:101740400-101749200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr9:101740400-101753400	Weak transcription	Spleen	Spleen
8	chr9:101740400-101756800	Weak transcription	Ovary	ovary
9	chr9:101740600-101745400	Weak transcription	Right Atrium	heart
10	chr9:101740600-101749200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr9:101740800-101745000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:101740800-101745000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr9:101740800-101745400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:101740800-101745600	Weak transcription	Placenta	Placenta
15	chr9:101740800-101745600	Weak transcription	Pancreas	Pancrea
16	chr9:101740800-101750200	Weak transcription	Esophagus	oesophagus
17	chr9:101740800-101751400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr9:101741000-101745200	Weak transcription	NHDF-Ad	bronchial
19	chr9:101741200-101745800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:101741800-101746400	Enhancers	Fetal Muscle Leg	muscle
21	chr9:101741800-101748800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr9:101742600-101746000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr9:101742800-101745600	Weak transcription	Adipose Nuclei	Adipose
24	chr9:101742800-101748600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr9:101742800-101750400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:101742800-101754200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr9:101743000-101744800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr9:101743000-101745000	Weak transcription	Fetal Muscle Trunk	muscle
29	chr9:101743000-101745400	Weak transcription	HMEC	breast
30	chr9:101743000-101745600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr9:101743000-101746400	Weak transcription	Left Ventricle	heart
32	chr9:101743400-101745200	Weak transcription	HSMM	muscle
33	chr9:101743400-101745200	Weak transcription	HSMMtube	muscle
34	chr9:101743400-101745600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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