Variant report

Variant	rs59112541
Chromosome Location	chr9:101762606-101762607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:101762428..101763408-chr9:101902234..101903630,9	MCF-7	breast:
2	chr9:101610611..101611507-chr9:101762517..101763150,2	K562	blood:
3	chr9:101760174..101763909-chr9:101764160..101767138,3	K562	blood:
4	chr9:101762134..101763385-chr9:101902694..101903814,11	K562	blood:
5	chr9:101736882..101737407-chr9:101762143..101763138,2	MCF-7	breast:
6	chr9:101762316..101762978-chr9:101904959..101905498,2	MCF-7	breast:
7	chr9:101755503..101758615-chr9:101759001..101763298,4	K562	blood:
8	chr9:101762444..101763486-chr9:101902217..101903969,25	MCF-7	breast:
9	chr9:101759295..101764429-chr9:101866150..101870418,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000119514	Chromatin interaction
ENSG00000106799	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12005080	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12554684	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1543709	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16918106	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16918113	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2075662	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2900147	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3780624	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4327910	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4743303	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4743307	0.93[EUR][1000 genomes]
rs56997979	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57410362	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs989392	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6635	chr9:101728257-101773253	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101757400-101763400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:101760200-101772800	Weak transcription	Aorta	Aorta
3	chr9:101760400-101763000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr9:101760400-101763000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr9:101760400-101767400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr9:101761000-101763600	Enhancers	Fetal Heart	heart
7	chr9:101761200-101763000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:101761200-101763000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr9:101761200-101763000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr9:101761200-101763000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:101761200-101763200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr9:101761200-101763800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:101761400-101763000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr9:101761400-101763000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr9:101761400-101763400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr9:101761600-101762800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr9:101761600-101762800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr9:101761600-101762800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr9:101761600-101762800	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr9:101761600-101762800	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr9:101761600-101762800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:101761600-101762800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr9:101761600-101762800	Weak transcription	Stomach Mucosa	stomach
24	chr9:101761600-101762800	Weak transcription	HSMM	muscle
25	chr9:101761600-101762800	Weak transcription	K562	blood
26	chr9:101761600-101763000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr9:101761600-101763000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr9:101761600-101763000	Weak transcription	Primary B cells from peripheral blood	blood
29	chr9:101761600-101763000	Weak transcription	Brain Hippocampus Middle	brain
30	chr9:101761600-101763200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr9:101761600-101763400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr9:101761600-101763400	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr9:101761600-101767400	Weak transcription	Colonic Mucosa	Colon
34	chr9:101761600-101768400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr9:101761600-101770400	Weak transcription	Fetal Intestine Small	intestine
36	chr9:101761600-101814400	Weak transcription	Gastric	stomach
37	chr9:101761800-101762800	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr9:101761800-101762800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr9:101761800-101762800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr9:101761800-101762800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr9:101761800-101762800	Weak transcription	Fetal Muscle Leg	muscle
42	chr9:101761800-101762800	Weak transcription	Right Ventricle	heart
43	chr9:101761800-101763000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr9:101761800-101763000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr9:101761800-101763000	Weak transcription	Colon Smooth Muscle	Colon
46	chr9:101761800-101763000	Weak transcription	Osteobl	bone
47	chr9:101761800-101763200	Weak transcription	HSMMtube	muscle
48	chr9:101761800-101763200	Weak transcription	NHDF-Ad	bronchial
49	chr9:101761800-101763400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr9:101761800-101764000	Weak transcription	Hela-S3	cervix

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