Variant report

Variant	rs3780624
Chromosome Location	chr9:101751062-101751063
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101748657..101752493-chr9:101836719..101838715,3	K562	blood:
2	chr9:101746248..101748364-chr9:101750240..101752168,2	MCF-7	breast:
3	chr9:101750729..101753162-chr9:101895041..101897883,2	MCF-7	breast:
4	chr9:101749508..101753145-chr9:101836719..101839131,3	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12005080	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12554684	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1543709	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16918106	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16918113	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2075662	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2900147	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4327910	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4743303	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4743307	0.89[EUR][1000 genomes]
rs56997979	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57410362	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59112541	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs989392	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6635	chr9:101728257-101773253	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101737800-101760800	Weak transcription	Gastric	stomach
2	chr9:101740400-101753400	Weak transcription	Spleen	Spleen
3	chr9:101740400-101756800	Weak transcription	Ovary	ovary
4	chr9:101740800-101751400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr9:101742800-101754200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:101746800-101754400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr9:101747800-101751200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:101748200-101751600	Weak transcription	Pancreas	Pancrea
9	chr9:101749000-101752600	Enhancers	Colon Smooth Muscle	Colon
10	chr9:101749000-101753200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:101749200-101751800	Genic enhancers	Fetal Muscle Leg	muscle
12	chr9:101749200-101752000	Enhancers	Fetal Brain Male	brain
13	chr9:101749200-101753000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:101749200-101753000	Genic enhancers	Adipose Nuclei	Adipose
15	chr9:101749200-101753000	Enhancers	Right Atrium	heart
16	chr9:101749200-101753000	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr9:101749200-101753200	Enhancers	Right Ventricle	heart
18	chr9:101749400-101751400	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr9:101749400-101751600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr9:101749400-101752800	Enhancers	Aorta	Aorta
21	chr9:101749400-101753000	Enhancers	NHDF-Ad	bronchial
22	chr9:101749600-101753000	Enhancers	NHLF	lung
23	chr9:101749800-101751800	Strong transcription	Fetal Stomach	stomach
24	chr9:101749800-101753400	Enhancers	HSMM	muscle
25	chr9:101750000-101753600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr9:101750200-101752200	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr9:101750200-101755200	Weak transcription	Brain Substantia Nigra	brain
28	chr9:101750400-101751400	Weak transcription	Brain Hippocampus Middle	brain
29	chr9:101750400-101751400	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr9:101750400-101751400	Strong transcription	Fetal Muscle Trunk	muscle
31	chr9:101750400-101752200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr9:101750400-101752200	Enhancers	Rectal Smooth Muscle	rectum
33	chr9:101750400-101753000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr9:101750400-101753200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr9:101750400-101754400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr9:101750600-101751400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr9:101750600-101751400	Weak transcription	Colonic Mucosa	Colon
38	chr9:101750600-101751400	Weak transcription	Psoas Muscle	Psoas
39	chr9:101750600-101751800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr9:101750600-101753000	Enhancers	HSMMtube	muscle
41	chr9:101750600-101753000	Enhancers	Osteobl	bone
42	chr9:101750600-101753200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr9:101750800-101751200	Weak transcription	Placenta	Placenta
44	chr9:101750800-101751200	Weak transcription	Left Ventricle	heart
45	chr9:101750800-101751400	Weak transcription	Stomach Smooth Muscle	stomach
46	chr9:101750800-101751400	Enhancers	NH-A	brain
47	chr9:101750800-101752800	Enhancers	Muscle Satellite Cultured Cells	--
48	chr9:101750800-101752800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr9:101751000-101752600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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