Variant report

Variant	rs56997979
Chromosome Location	chr9:101740397-101740398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101734796..101736324-chr9:101740072..101741805,2	MCF-7	breast:
2	chr9:101739430..101741862-chr9:101743138..101745419,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12005080	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12554684	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1543709	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16918106	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16918113	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2075662	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2900147	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3780624	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4327910	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4743303	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4743307	0.82[EUR][1000 genomes]
rs57410362	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59112541	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs989392	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6635	chr9:101728257-101773253	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101728000-101749400	Weak transcription	Aorta	Aorta
2	chr9:101734800-101740400	Enhancers	Left Ventricle	heart
3	chr9:101736000-101740400	Enhancers	Right Ventricle	heart
4	chr9:101737800-101740600	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr9:101737800-101741400	Enhancers	Fetal Muscle Trunk	muscle
6	chr9:101737800-101741400	Enhancers	Fetal Muscle Leg	muscle
7	chr9:101737800-101742800	Enhancers	Adipose Nuclei	Adipose
8	chr9:101737800-101760800	Weak transcription	Gastric	stomach
9	chr9:101738000-101741000	Enhancers	Colon Smooth Muscle	Colon
10	chr9:101738200-101740800	Enhancers	Pancreas	Pancrea
11	chr9:101738800-101740600	Enhancers	Right Atrium	heart
12	chr9:101739000-101740400	Enhancers	Lung	lung
13	chr9:101739000-101740800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:101739000-101740800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr9:101739200-101740600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr9:101739200-101740800	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr9:101739200-101742000	Enhancers	Stomach Smooth Muscle	stomach
18	chr9:101739400-101740800	Enhancers	Placenta	Placenta
19	chr9:101739600-101740800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
20	chr9:101739600-101740800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr9:101739600-101740800	Enhancers	Fetal Heart	heart
22	chr9:101739600-101741600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr9:101739600-101742000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr9:101739800-101740400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
25	chr9:101739800-101740800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:101739800-101740800	Enhancers	Esophagus	oesophagus
27	chr9:101740000-101740400	Enhancers	Spleen	Spleen
28	chr9:101740000-101740800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:101740000-101746200	Weak transcription	Psoas Muscle	Psoas
30	chr9:101740000-101746400	Weak transcription	Fetal Stomach	stomach
31	chr9:101740200-101740400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr9:101740200-101740400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr9:101740200-101740400	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr9:101740200-101740400	Enhancers	Fetal Brain Female	brain
35	chr9:101740200-101740400	Enhancers	Ovary	ovary
36	chr9:101740200-101740400	Enhancers	Small Intestine	intestine
37	chr9:101740200-101740400	Enhancers	NHLF	lung
38	chr9:101740200-101740600	Enhancers	HSMMtube	muscle
39	chr9:101740200-101740800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
40	chr9:101740200-101741000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
41	chr9:101740200-101741000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr9:101740200-101741200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr9:101740200-101741200	Enhancers	Rectal Smooth Muscle	rectum
44	chr9:101740200-101741400	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr9:101740200-101741800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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