Variant report

Variant	rs4327910
Chromosome Location	chr9:101756620-101756621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101744002..101749570-chr9:101754118..101758389,6	K562	blood:
2	chr9:101751401..101755112-chr9:101755767..101760642,5	MCF-7	breast:
3	chr9:101755503..101758615-chr9:101759001..101763298,4	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12005080	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12554684	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1543709	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16918106	0.93[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16918113	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2075662	0.93[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2900147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3780624	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4743303	0.93[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4743307	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs56997979	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57410362	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59112541	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs989392	0.93[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6635	chr9:101728257-101773253	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101737800-101760800	Weak transcription	Gastric	stomach
2	chr9:101740400-101756800	Weak transcription	Ovary	ovary
3	chr9:101752000-101760800	Weak transcription	Brain Hippocampus Middle	brain
4	chr9:101753000-101756800	Weak transcription	Pancreas	Pancrea
5	chr9:101753000-101759800	Weak transcription	Hela-S3	cervix
6	chr9:101754400-101757000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:101754800-101757200	Genic enhancers	Fetal Muscle Trunk	muscle
8	chr9:101754800-101758000	Enhancers	Placenta	Placenta
9	chr9:101754800-101761800	Enhancers	Right Ventricle	heart
10	chr9:101755000-101758400	Genic enhancers	Adipose Nuclei	Adipose
11	chr9:101755200-101757600	Enhancers	Fetal Intestine Small	intestine
12	chr9:101755200-101758000	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr9:101755200-101758000	Genic enhancers	Fetal Muscle Leg	muscle
14	chr9:101755200-101758200	Enhancers	NHDF-Ad	bronchial
15	chr9:101755200-101759800	Enhancers	Fetal Heart	heart
16	chr9:101755200-101760800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:101755200-101761000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr9:101755400-101756800	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr9:101755400-101757400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr9:101755400-101757400	Enhancers	Fetal Intestine Large	intestine
21	chr9:101755400-101757600	Enhancers	Placenta Amnion	Placenta Amnion
22	chr9:101755400-101757800	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr9:101755400-101758000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr9:101755400-101758000	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr9:101755600-101756800	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr9:101755600-101757200	Enhancers	Duodenum Mucosa	Duodenum
27	chr9:101755600-101758000	Enhancers	Lung	lung
28	chr9:101755600-101760800	Weak transcription	Brain Cingulate Gyrus	brain
29	chr9:101755600-101761800	Enhancers	Left Ventricle	heart
30	chr9:101755800-101756800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr9:101755800-101757000	Enhancers	GM12878-XiMat	blood
32	chr9:101755800-101758000	Enhancers	Colonic Mucosa	Colon
33	chr9:101755800-101758200	Genic enhancers	Fetal Stomach	stomach
34	chr9:101755800-101760000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr9:101755800-101760800	Weak transcription	Brain Substantia Nigra	brain
36	chr9:101755800-101761800	Enhancers	Rectal Smooth Muscle	rectum
37	chr9:101756000-101756800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr9:101756000-101756800	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr9:101756000-101757200	Weak transcription	Esophagus	oesophagus
40	chr9:101756000-101759800	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr9:101756000-101761000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr9:101756200-101757600	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr9:101756200-101757600	Enhancers	Stomach Smooth Muscle	stomach
44	chr9:101756200-101759800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr9:101756400-101758000	Enhancers	Colon Smooth Muscle	Colon
46	chr9:101756400-101761400	Weak transcription	Spleen	Spleen
47	chr9:101756600-101756800	Enhancers	Brain Angular Gyrus	brain
48	chr9:101756600-101758000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr9:101756600-101758000	Enhancers	Right Atrium	heart
50	chr9:101756600-101758200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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